TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Trunk fat-free mass
:
←
→
chr7:139,030,640-140,449,834
Best TWAS P=2.71e-12 · Best GWAS P=8.03e-12 conditioned to 0.352
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
4
The Cancer Genome Atlas
Thyroid Carcinoma
PARP12
0.14
0.11
enet
10
0.12
9.4e-12
6.8
-7.0
2.7e-12
-0.93
0.00
1.00
TRUE
2
The Cancer Genome Atlas
Lung Adenocarcinoma
PARP12
0.02
0.01
blup
68
0.01
2.4e-02
6.6
-6.8
1.3e-11
-0.88
0.01
0.91
FALSE
3
The Cancer Genome Atlas
Prostate Adenocarcinoma
PARP12
0.06
0.04
lasso
2
0.04
1.3e-04
6.5
6.2
4.9e-10
0.93
0.01
0.97
FALSE
1
GTEx
Testis
PARP12
0.21
0.07
lasso
8
0.05
2.7e-03
5.4
-5.1
3.0e-07
-0.59
0.14
0.50
FALSE