TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Trunk fat-free mass
:
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chr1:150,000,165-150,847,647
Best TWAS P=6.24e-09 · Best GWAS P=5.78e-12 conditioned to 9.52e-10
150M
150.1M
150.2M
150.3M
150.4M
150.5M
150.6M
150.7M
150.8M
0
2
4
6
8
10
12
physical position
-log10 P
Conditional
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
1
The Cancer Genome Atlas
Breast Invasive Carcinoma
C1orf54
0.06
0.02
enet
13
0.02
1.2e-05
5.1
-5.8
6.2e-09
-0.14
0.00
0.98
TRUE
4
The Cancer Genome Atlas
Brain Lower Grade Glioma
MRPS21
0.13
0.13
enet
10
0.13
1.7e-14
-4.3
5.5
3.1e-08
0.38
0.05
0.91
FALSE
2
The Cancer Genome Atlas
Head and Neck Squamous Cell Carcinoma
C1orf54
0.04
0.04
lasso
2
0.03
2.0e-04
5.1
-5.3
1.3e-07
-0.47
0.00
0.99
FALSE
3
The Cancer Genome Atlas
Kidney Renal Clear Cell Carcinoma
C1orf54
0.06
0.03
lasso
1
0.03
1.3e-04
5.1
-5.1
2.7e-07
-0.48
0.00
0.93
FALSE