Best TWAS P=1.84e-11 · Best GWAS P=1.4e-11 conditioned to 0.0155
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | The Cancer Genome Atlas | Esophageal Carcinoma | HOXD12 | 0.21 | 0.05 | blup | 48 | 0.13 | 6.3e-05 | 5.5 | -6.6 | 5.0e-11 | -0.63 | 0.01 | 0.60 | FALSE |
| 2 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | HOXD11 | 0.03 | 0.02 | enet | 7 | 0.03 | 5.8e-04 | 6.4 | -6.7 | 1.8e-11 | -0.78 | 0.01 | 0.94 | TRUE |