Best TWAS P=5.44e-08 · Best GWAS P=1.23e-08 conditioned to 5.87e-05
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | CommonMind | Brain Pre-frontal Cortex | CEP63 | 0.09 | 0.06 | bslmm | 502 | 0.07 | 1.4e-08 | -3.5 | 5.1 | 2.8e-07 | 0.34 | 0.95 | 0.02 | FALSE |
| 2 | CommonMind | Brain Pre-frontal Cortex | KY | 0.10 | 0.09 | bslmm | 499 | 0.10 | 7.5e-12 | -3.0 | -5.4 | 5.4e-08 | -0.36 | 0.97 | 0.00 | TRUE |
| 3 | The Cancer Genome Atlas | Glioblastoma Multiforme | ANAPC13 | 0.24 | 0.09 | lasso | 12 | 0.08 | 1.8e-03 | -3.6 | 5.3 | 1.2e-07 | 0.70 | 0.04 | 0.40 | FALSE |