TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Trunk fat-free mass
:
←
→
chr3:133,518,198-135,067,701
Best TWAS P=5.44e-08 · Best GWAS P=1.23e-08 conditioned to 5.87e-05
133.6M
133.8M
134M
134.2M
134.4M
134.6M
134.8M
135M
0
2
4
6
8
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
2
CommonMind
Brain Pre-frontal Cortex
KY
0.10
0.09
bslmm
499
0.10
7.5e-12
-3.0
-5.4
5.4e-08
-0.36
0.97
0.00
TRUE
3
The Cancer Genome Atlas
Glioblastoma Multiforme
ANAPC13
0.24
0.09
lasso
12
0.08
1.8e-03
-3.6
5.3
1.2e-07
0.70
0.04
0.40
FALSE
1
CommonMind
Brain Pre-frontal Cortex
CEP63
0.09
0.06
bslmm
502
0.07
1.4e-08
-3.5
5.1
2.8e-07
0.34
0.95
0.02
FALSE