Best TWAS P=4.28e-09 · Best GWAS P=8.47e-11 conditioned to 0.000419
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adrenal Gland | DLG5 | 0.22 | 0.14 | lasso | 6 | 0.11 | 8.5e-05 | -5.2 | -5.9 | 4.3e-09 | 0.04 | 0.02 | 0.97 | TRUE |
2 | GTEx | Artery Aorta | RP13-39P12.3 | 0.14 | 0.13 | enet | 9 | 0.12 | 2.2e-07 | -5.1 | -5.2 | 2.5e-07 | 0.01 | 0.03 | 0.97 | FALSE |
3 | GTEx | Brain Caudate basal ganglia | C10orf11 | 0.35 | 0.27 | lasso | 4 | 0.25 | 9.8e-08 | 5.2 | -5.2 | 1.5e-07 | -0.73 | 0.47 | 0.49 | FALSE |
4 | GTEx | Brain Cortex | C10orf11 | 0.32 | 0.15 | lasso | 8 | 0.21 | 1.4e-06 | 5.3 | -5.8 | 7.0e-09 | -0.78 | 0.35 | 0.60 | TRUE |
5 | GTEx | Breast Mammary Tissue | DLG5 | 0.15 | 0.09 | lasso | 7 | 0.08 | 6.7e-05 | -5.4 | -5.1 | 2.9e-07 | -0.01 | 0.02 | 0.96 | FALSE |
6 | GTEx | Cells Transformed fibroblasts | DLG5 | 0.25 | 0.18 | lasso | 11 | 0.16 | 2.0e-12 | -5.3 | -5.2 | 2.2e-07 | 0.00 | 0.02 | 0.98 | FALSE |
7 | GTEx | Heart Atrial Appendage | DLG5 | 0.32 | 0.23 | lasso | 4 | 0.24 | 3.9e-11 | -5.4 | -5.3 | 1.0e-07 | 0.00 | 0.02 | 0.98 | FALSE |
8 | GTEx | Heart Left Ventricle | DLG5 | 0.13 | 0.10 | lasso | 4 | 0.09 | 1.2e-05 | -5.4 | -5.4 | 7.3e-08 | 0.00 | 0.03 | 0.97 | FALSE |
9 | GTEx | Liver | DLG5 | 0.42 | 0.31 | lasso | 5 | 0.28 | 2.1e-08 | -5.3 | -5.3 | 1.4e-07 | 0.01 | 0.02 | 0.98 | FALSE |
10 | GTEx | Lung | DLG5 | 0.41 | 0.38 | lasso | 8 | 0.37 | 7.9e-30 | -5.2 | -5.2 | 1.9e-07 | -0.01 | 0.04 | 0.96 | FALSE |
11 | GTEx | Muscle Skeletal | C10orf11 | 0.11 | 0.13 | lasso | 3 | 0.12 | 5.1e-12 | 5.3 | -5.5 | 3.7e-08 | -0.74 | 0.70 | 0.30 | FALSE |
12 | GTEx | Nerve Tibial | DLG5 | 0.51 | 0.44 | lasso | 6 | 0.50 | 1.4e-39 | -5.1 | -5.2 | 2.4e-07 | 0.00 | 0.06 | 0.94 | FALSE |
13 | GTEx | Ovary | DLG5 | 0.62 | 0.38 | lasso | 6 | 0.40 | 5.3e-11 | -5.3 | -5.7 | 1.2e-08 | 0.01 | 0.02 | 0.97 | FALSE |
14 | GTEx | Ovary | RP13-39P12.3 | 0.42 | 0.29 | lasso | 5 | 0.33 | 7.5e-09 | -5.3 | -5.8 | 6.6e-09 | 0.02 | 0.02 | 0.97 | FALSE |
15 | GTEx | Pancreas | DLG5 | 0.39 | 0.43 | enet | 11 | 0.44 | 3.5e-20 | -5.1 | -5.3 | 1.4e-07 | 0.00 | 0.04 | 0.96 | FALSE |
16 | GTEx | Pancreas | RP13-39P12.3 | 0.20 | 0.24 | lasso | 3 | 0.23 | 3.8e-10 | -5.2 | -5.2 | 1.9e-07 | 0.00 | 0.03 | 0.97 | FALSE |
17 | GTEx | Pituitary | DLG5 | 0.45 | 0.36 | lasso | 11 | 0.31 | 1.9e-08 | -5.3 | -5.2 | 1.5e-07 | 0.00 | 0.02 | 0.98 | FALSE |
18 | GTEx | Pituitary | RP13-39P12.3 | 0.38 | 0.22 | lasso | 11 | 0.17 | 3.8e-05 | -5.3 | -5.1 | 3.0e-07 | -0.01 | 0.02 | 0.95 | FALSE |
19 | GTEx | Thyroid | DLG5 | 0.39 | 0.43 | lasso | 5 | 0.43 | 1.5e-35 | -5.2 | -5.3 | 9.3e-08 | 0.00 | 0.04 | 0.96 | FALSE |
20 | GTEx | Thyroid | RP13-39P12.3 | 0.28 | 0.30 | lasso | 8 | 0.29 | 3.3e-22 | -5.2 | -5.2 | 1.6e-07 | 0.00 | 0.04 | 0.96 | FALSE |
21 | ROSMAP | Brain Pre-frontal Cortex | C10orf11 | 0.20 | 0.23 | lasso | 4 | 0.23 | 1.1e-29 | 5.3 | -5.6 | 2.3e-08 | -0.71 | 0.70 | 0.30 | FALSE |
22 | ROSMAP | Brain Pre-frontal Cortex | DLG5 | 0.19 | 0.17 | bslmm | 592 | 0.20 | 1.5e-24 | -5.3 | -5.6 | 2.4e-08 | -0.02 | 0.02 | 0.98 | FALSE |
23 | The Cancer Genome Atlas | Colon Adenocarcinoma | DLG5 | 0.08 | 0.03 | blup | 116 | 0.06 | 2.1e-04 | 4.1 | -5.3 | 9.4e-08 | 0.06 | 0.06 | 0.91 | FALSE |
24 | The Cancer Genome Atlas | Thyroid Carcinoma | DLG5 | 0.13 | 0.08 | enet | 10 | 0.10 | 1.2e-09 | -5.7 | -5.2 | 2.2e-07 | -0.02 | 0.00 | 1.00 | FALSE |