Best TWAS P=1.18e-13 · Best GWAS P=4.88e-14 conditioned to 1
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | IPO8 | 0.22 | 0.28 | lasso | 8 | 0.29 | 1.0e-35 | 5.1 | -5.1 | 2.6e-07 | 0.53 | 1.00 | 0.00 | FALSE |
2 | GTEx | Adipose Subcutaneous | IPO8 | 0.13 | 0.09 | lasso | 6 | 0.12 | 2.7e-10 | 5.1 | -6.7 | 1.9e-11 | 0.79 | 0.29 | 0.71 | FALSE |
3 | GTEx | Adipose Visceral Omentum | IPO8 | 0.17 | 0.08 | lasso | 2 | 0.05 | 9.9e-04 | 5.4 | -5.4 | 8.5e-08 | 0.53 | 0.27 | 0.63 | FALSE |
4 | GTEx | Artery Aorta | IPO8 | 0.17 | 0.06 | enet | 29 | 0.04 | 2.2e-03 | -7.4 | -5.8 | 5.1e-09 | 0.69 | 0.02 | 0.97 | FALSE |
5 | GTEx | Artery Tibial | IPO8 | 0.17 | 0.14 | lasso | 4 | 0.14 | 4.5e-11 | 5.1 | -5.6 | 2.4e-08 | 0.67 | 0.67 | 0.33 | FALSE |
6 | GTEx | Breast Mammary Tissue | IPO8 | 0.11 | 0.11 | lasso | 10 | 0.08 | 4.3e-05 | 5.1 | -5.3 | 1.0e-07 | 0.58 | 0.19 | 0.77 | FALSE |
7 | GTEx | Cells EBV-transformed lymphocytes | IPO8 | 0.22 | 0.14 | lasso | 4 | 0.14 | 2.5e-05 | -7.5 | -6.8 | 1.1e-11 | 0.88 | 0.03 | 0.97 | FALSE |
8 | GTEx | Colon Transverse | IPO8 | 0.11 | 0.11 | lasso | 2 | 0.10 | 2.4e-05 | 5.1 | -5.2 | 2.4e-07 | 0.54 | 0.46 | 0.50 | FALSE |
9 | GTEx | Esophagus Muscularis | IPO8 | 0.24 | 0.19 | lasso | 6 | 0.18 | 5.7e-11 | 5.4 | -5.7 | 1.3e-08 | 0.60 | 0.97 | 0.03 | FALSE |
10 | GTEx | Heart Left Ventricle | IPO8 | 0.14 | 0.00 | lasso | 7 | 0.03 | 8.6e-03 | -7.5 | -5.3 | 1.4e-07 | 0.81 | 0.03 | 0.88 | FALSE |
11 | GTEx | Lung | IPO8 | 0.07 | 0.06 | lasso | 5 | 0.07 | 7.5e-06 | 5.1 | -7.1 | 1.1e-12 | 0.77 | 0.09 | 0.90 | FALSE |
12 | GTEx | Nerve Tibial | IPO8 | 0.21 | 0.16 | lasso | 6 | 0.15 | 1.3e-10 | -7.4 | -7.4 | 1.2e-13 | 1.00 | 0.02 | 0.98 | TRUE |
13 | GTEx | Skin Sun Exposed Lower leg | IPO8 | 0.23 | 0.08 | lasso | 10 | 0.13 | 1.1e-10 | -7.4 | -7.2 | 5.8e-13 | 0.87 | 0.03 | 0.97 | FALSE |
14 | ROSMAP | Brain Pre-frontal Cortex | IPO8 | 0.21 | 0.23 | lasso | 12 | 0.22 | 8.0e-28 | 5.1 | -5.5 | 3.3e-08 | 0.60 | 1.00 | 0.00 | FALSE |
15 | The Cancer Genome Atlas | Breast Invasive Carcinoma | IPO8 | 0.05 | 0.03 | lasso | 3 | 0.03 | 1.3e-06 | 5.1 | -5.9 | 4.6e-09 | 0.64 | 0.73 | 0.27 | FALSE |
16 | The Cancer Genome Atlas | Colon Adenocarcinoma | IPO8 | 0.06 | 0.06 | blup | 64 | 0.05 | 6.2e-04 | 5.1 | -5.2 | 1.5e-07 | 0.52 | 0.28 | 0.16 | FALSE |
17 | The Cancer Genome Atlas | Lung Adenocarcinoma | IPO8 | 0.06 | 0.04 | blup | 58 | 0.04 | 1.5e-05 | 5.3 | -6.3 | 3.3e-10 | 0.74 | 0.36 | 0.62 | FALSE |
18 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | IPO8 | 0.04 | 0.03 | blup | 58 | 0.03 | 9.7e-05 | 5.1 | -6.4 | 1.9e-10 | 0.72 | 0.32 | 0.51 | FALSE |
19 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | IPO8 | 0.09 | 0.05 | blup | 64 | 0.03 | 2.9e-02 | 5.1 | -5.5 | 4.1e-08 | 0.56 | 0.11 | 0.14 | FALSE |
20 | The Cancer Genome Atlas | Stomach Adenocarcinoma | IPO8 | 0.04 | 0.04 | enet | 7 | 0.02 | 8.1e-03 | 5.1 | -5.5 | 3.6e-08 | 0.55 | 0.18 | 0.22 | FALSE |