Best TWAS P=1.07e-10 · Best GWAS P=4.29e-10 conditioned to 0.00036
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | LOC100129961 | 0.17 | 0.14 | enet | 9 | 0.14 | 2.6e-17 | -4.5 | -5.2 | 2.1e-07 | -0.36 | 0.16 | 0.82 | FALSE |
2 | GTEx | Esophagus Mucosa | DARS | 0.12 | 0.05 | lasso | 4 | 0.04 | 9.0e-04 | 5.5 | 5.7 | 1.6e-08 | 0.42 | 0.11 | 0.77 | FALSE |
3 | GTEx | Esophagus Muscularis | DARS | 0.12 | 0.11 | lasso | 3 | 0.09 | 3.5e-06 | 5.5 | 5.6 | 1.7e-08 | 0.40 | 0.09 | 0.90 | FALSE |
4 | GTEx | Lung | DARS | 0.07 | 0.05 | lasso | 4 | 0.05 | 5.8e-05 | 5.5 | 5.6 | 1.9e-08 | 0.40 | 0.10 | 0.89 | FALSE |
5 | GTEx | Nerve Tibial | DARS | 0.13 | 0.06 | lasso | 5 | 0.05 | 3.2e-04 | 5.8 | 5.7 | 1.0e-08 | 0.41 | 0.09 | 0.87 | FALSE |
6 | GTEx | Skin Not Sun Exposed Suprapubic | DARS | 0.15 | 0.11 | enet | 4 | 0.10 | 3.0e-06 | 5.5 | 5.8 | 6.1e-09 | 0.41 | 0.07 | 0.92 | FALSE |
7 | GTEx | Skin Sun Exposed Lower leg | DARS | 0.10 | 0.12 | lasso | 1 | 0.11 | 1.7e-09 | 5.5 | 5.5 | 5.0e-08 | 0.39 | 0.21 | 0.79 | FALSE |
8 | GTEx | Thyroid | DARS | 0.20 | 0.13 | lasso | 3 | 0.15 | 1.3e-11 | 5.5 | 5.8 | 5.8e-09 | 0.42 | 0.14 | 0.86 | FALSE |
9 | NTR | Blood | MCM6 | 0.02 | 0.02 | lasso | 2 | 0.03 | 1.2e-08 | 4.7 | 5.7 | 1.6e-08 | 0.47 | 0.18 | 0.82 | FALSE |
10 | ROSMAP | Brain Pre-frontal Cortex | CCNT2 | 0.06 | 0.03 | enet | 27 | 0.05 | 1.6e-06 | 5.1 | 5.4 | 5.6e-08 | 0.41 | 0.02 | 0.98 | FALSE |
11 | YFS | Blood | DARS | 0.17 | 0.19 | enet | 36 | 0.19 | 8.2e-60 | 5.6 | 6.5 | 1.1e-10 | 0.48 | 0.16 | 0.84 | TRUE |
12 | The Cancer Genome Atlas | Breast Invasive Carcinoma | LCT | 0.02 | 0.02 | enet | 3 | 0.03 | 7.6e-07 | 5.2 | -5.8 | 6.3e-09 | -0.47 | 0.02 | 0.98 | FALSE |
13 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | DARS | 0.04 | 0.05 | lasso | 2 | 0.05 | 3.5e-06 | 5.2 | 5.4 | 7.3e-08 | 0.39 | 0.02 | 0.98 | FALSE |
14 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | ACMSD | 0.04 | 0.01 | blup | 46 | 0.02 | 2.2e-03 | 4.9 | 5.3 | 1.3e-07 | 0.37 | 0.02 | 0.83 | FALSE |
15 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | DARS | 0.10 | 0.08 | enet | 14 | 0.11 | 5.5e-12 | 5.8 | 5.7 | 1.5e-08 | 0.39 | 0.02 | 0.98 | FALSE |
16 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | LCT | 0.04 | 0.02 | blup | 36 | 0.02 | 1.9e-03 | 4.7 | -5.5 | 4.7e-08 | -0.50 | 0.06 | 0.79 | FALSE |
17 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | DARS | 0.09 | 0.07 | blup | 40 | 0.06 | 1.6e-04 | 5.8 | 5.3 | 1.0e-07 | 0.27 | 0.02 | 0.97 | FALSE |
18 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | DARS | 0.02 | 0.02 | lasso | 2 | 0.02 | 3.9e-03 | 5.7 | 5.8 | 8.6e-09 | 0.39 | 0.01 | 0.93 | FALSE |
19 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | DARS | 0.08 | 0.10 | lasso | 4 | 0.09 | 8.8e-05 | 5.8 | 5.8 | 7.3e-09 | 0.41 | 0.02 | 0.93 | FALSE |
20 | The Cancer Genome Atlas | Prostate Adenocarcinoma | DARS | 0.04 | 0.02 | blup | 40 | 0.01 | 2.1e-02 | 5.5 | 6.2 | 6.9e-10 | 0.44 | 0.02 | 0.93 | FALSE |
21 | The Cancer Genome Atlas | Soft Tissue Sarcoma | DARS | 0.04 | 0.04 | blup | 40 | 0.04 | 1.6e-03 | 5.8 | 6.0 | 2.2e-09 | 0.45 | 0.02 | 0.93 | FALSE |
22 | The Cancer Genome Atlas | Thyroid Carcinoma | DARS | 0.22 | 0.15 | enet | 13 | 0.19 | 4.1e-18 | 5.4 | 5.7 | 1.2e-08 | 0.33 | 0.03 | 0.97 | FALSE |