Best TWAS P=1.9e-09 · Best GWAS P=1.34e-09 conditioned to 1
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Artery Aorta | BCKDHB | 0.14 | 0.14 | lasso | 1 | 0.13 | 9.8e-08 | 5.4 | 5.4 | 7.6e-08 | 0.90 | 0.11 | 0.88 | FALSE |
2 | GTEx | Artery Tibial | BCKDHB | 0.16 | 0.16 | lasso | 11 | 0.15 | 4.9e-12 | 5.5 | 5.3 | 8.8e-08 | 0.91 | 0.08 | 0.92 | FALSE |
3 | GTEx | Cells Transformed fibroblasts | BCKDHB | 0.16 | 0.02 | enet | 42 | 0.04 | 3.7e-04 | 6.0 | 5.7 | 1.6e-08 | 0.67 | 0.01 | 0.98 | FALSE |
4 | GTEx | Colon Transverse | RP11-250B2.6 | 0.15 | 0.16 | lasso | 2 | 0.13 | 9.8e-07 | 6.0 | -5.8 | 6.1e-09 | -1.00 | 0.00 | 1.00 | FALSE |
5 | GTEx | Esophagus Muscularis | BCKDHB | 0.18 | 0.07 | enet | 25 | 0.06 | 2.4e-04 | 5.5 | 5.8 | 6.4e-09 | 0.85 | 0.09 | 0.90 | FALSE |
6 | GTEx | Lung | BCKDHB | 0.09 | 0.06 | enet | 10 | 0.05 | 1.8e-04 | 5.5 | 5.4 | 5.3e-08 | 0.90 | 0.11 | 0.87 | FALSE |
7 | GTEx | Lung | RP11-250B2.6 | 0.09 | 0.05 | enet | 16 | 0.07 | 5.3e-06 | 6.1 | -5.5 | 3.4e-08 | -0.80 | 0.00 | 1.00 | FALSE |
8 | GTEx | Nerve Tibial | BCKDHB | 0.18 | 0.11 | lasso | 9 | 0.10 | 2.4e-07 | 5.4 | 5.8 | 5.8e-09 | 0.92 | 0.04 | 0.96 | FALSE |
9 | GTEx | Skin Not Sun Exposed Suprapubic | RP11-250B2.6 | 0.08 | 0.05 | lasso | 4 | 0.01 | 8.1e-02 | 6.1 | -5.6 | 2.1e-08 | -0.94 | 0.02 | 0.93 | FALSE |
10 | GTEx | Stomach | RP11-250B2.6 | 0.13 | 0.15 | lasso | 6 | 0.12 | 2.5e-06 | 6.0 | -5.9 | 3.8e-09 | -0.99 | 0.00 | 1.00 | FALSE |
11 | GTEx | Testis | RP11-250B2.6 | 0.09 | 0.05 | lasso | 6 | 0.04 | 6.9e-03 | 6.1 | -5.8 | 5.1e-09 | -0.94 | 0.02 | 0.96 | FALSE |
12 | GTEx | Thyroid | BCKDHB | 0.17 | 0.06 | lasso | 8 | 0.10 | 3.4e-08 | 6.1 | 5.7 | 1.1e-08 | 0.92 | 0.01 | 0.99 | FALSE |
13 | GTEx | Thyroid | RP11-250B2.6 | 0.11 | 0.10 | lasso | 2 | 0.07 | 3.2e-06 | 6.0 | -6.0 | 1.9e-09 | -1.00 | 0.00 | 1.00 | TRUE |
14 | ROSMAP | Brain Pre-frontal Cortex | BCKDHB | 0.18 | 0.13 | lasso | 6 | 0.14 | 2.9e-17 | 5.4 | 5.1 | 2.8e-07 | 0.88 | 0.12 | 0.88 | FALSE |
15 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | BCKDHB | 0.19 | 0.02 | blup | 137 | 0.06 | 2.6e-03 | 5.5 | 5.1 | 2.9e-07 | 0.78 | 0.02 | 0.35 | FALSE |