Best TWAS P=5.1e-15 · Best GWAS P=5.82e-18 conditioned to 1.04e-05
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adrenal Gland | DLG5 | 0.22 | 0.14 | lasso | 6 | 0.11 | 8.5e-05 | -4.8 | -5.7 | 1.2e-08 | -0.04 | 0.02 | 0.96 | TRUE |
2 | GTEx | Brain Caudate basal ganglia | C10orf11 | 0.35 | 0.27 | lasso | 4 | 0.25 | 9.8e-08 | 7.1 | -7.2 | 6.8e-13 | 0.69 | 0.63 | 0.32 | FALSE |
3 | GTEx | Brain Cortex | C10orf11 | 0.32 | 0.15 | lasso | 8 | 0.21 | 1.4e-06 | 7.2 | -7.8 | 5.1e-15 | 0.77 | 0.38 | 0.57 | TRUE |
4 | GTEx | Brain Frontal Cortex BA9 | C10orf11 | 0.33 | 0.18 | enet | 11 | 0.19 | 9.3e-06 | 7.1 | -7.1 | 1.1e-12 | 0.70 | 0.47 | 0.38 | FALSE |
5 | GTEx | Muscle Skeletal | C10orf11 | 0.11 | 0.13 | lasso | 3 | 0.12 | 5.1e-12 | 7.2 | -7.4 | 9.8e-14 | 0.73 | 0.99 | 0.01 | FALSE |
6 | GTEx | Ovary | DLG5 | 0.62 | 0.38 | lasso | 6 | 0.40 | 5.3e-11 | -4.9 | -5.4 | 6.4e-08 | -0.01 | 0.02 | 0.98 | FALSE |
7 | GTEx | Ovary | RP13-39P12.3 | 0.42 | 0.29 | lasso | 5 | 0.33 | 7.5e-09 | -4.9 | -5.5 | 3.1e-08 | -0.01 | 0.01 | 0.98 | FALSE |
8 | ROSMAP | Brain Pre-frontal Cortex | C10orf11 | 0.20 | 0.23 | lasso | 4 | 0.23 | 1.1e-29 | 7.2 | -7.2 | 4.7e-13 | 0.69 | 1.00 | 0.00 | FALSE |
9 | ROSMAP | Brain Pre-frontal Cortex | DLG5 | 0.19 | 0.17 | bslmm | 592 | 0.20 | 1.5e-24 | -4.9 | -5.2 | 2.4e-07 | 0.03 | 0.01 | 0.98 | FALSE |