Best TWAS P=5.63e-12 · Best GWAS P=1.51e-12 conditioned to 1
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Subcutaneous | IPO8 | 0.13 | 0.09 | lasso | 6 | 0.12 | 2.7e-10 | 4.5 | -6.1 | 1.2e-09 | 0.79 | 0.30 | 0.70 | FALSE |
2 | GTEx | Artery Tibial | IPO8 | 0.17 | 0.14 | lasso | 4 | 0.14 | 4.5e-11 | 4.4 | -5.2 | 2.2e-07 | 0.67 | 0.65 | 0.35 | FALSE |
3 | GTEx | Cells EBV-transformed lymphocytes | IPO8 | 0.22 | 0.14 | lasso | 4 | 0.14 | 2.5e-05 | -7.0 | -6.2 | 4.6e-10 | 0.88 | 0.02 | 0.97 | FALSE |
4 | GTEx | Esophagus Muscularis | IPO8 | 0.24 | 0.19 | lasso | 6 | 0.18 | 5.7e-11 | 4.8 | -5.2 | 2.6e-07 | 0.60 | 0.97 | 0.03 | FALSE |
5 | GTEx | Lung | IPO8 | 0.07 | 0.06 | lasso | 5 | 0.07 | 7.5e-06 | 4.5 | -6.4 | 1.7e-10 | 0.77 | 0.10 | 0.90 | FALSE |
6 | GTEx | Nerve Tibial | IPO8 | 0.21 | 0.16 | lasso | 6 | 0.15 | 1.3e-10 | -6.9 | -6.9 | 5.6e-12 | 1.00 | 0.02 | 0.98 | TRUE |
7 | GTEx | Skin Sun Exposed Lower leg | IPO8 | 0.23 | 0.08 | lasso | 10 | 0.13 | 1.1e-10 | -7.0 | -6.7 | 2.5e-11 | 0.87 | 0.02 | 0.98 | FALSE |
8 | The Cancer Genome Atlas | Breast Invasive Carcinoma | IPO8 | 0.05 | 0.03 | lasso | 3 | 0.03 | 1.3e-06 | 4.5 | -5.3 | 1.0e-07 | 0.64 | 0.72 | 0.28 | FALSE |
9 | The Cancer Genome Atlas | Lung Adenocarcinoma | IPO8 | 0.06 | 0.04 | blup | 58 | 0.04 | 1.5e-05 | 4.7 | -5.7 | 1.4e-08 | 0.74 | 0.35 | 0.63 | FALSE |
10 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | IPO8 | 0.04 | 0.03 | blup | 58 | 0.03 | 9.7e-05 | 4.5 | -5.7 | 1.2e-08 | 0.72 | 0.31 | 0.52 | FALSE |