Best TWAS P=5.75e-09 · Best GWAS P=5.35e-09 conditioned to 1
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Subcutaneous | DYNC1I2 | 0.13 | 0.11 | enet | 13 | 0.11 | 4.1e-09 | -5.7 | 5.8 | 5.8e-09 | -0.96 | 0.03 | 0.97 | TRUE |
2 | GTEx | Artery Aorta | SLC25A12 | 0.13 | 0.03 | lasso | 16 | 0.01 | 1.2e-01 | -5.3 | -5.5 | 4.0e-08 | 0.97 | 0.03 | 0.94 | FALSE |
3 | GTEx | Artery Tibial | DYNC1I2 | 0.10 | 0.06 | enet | 17 | 0.06 | 2.2e-05 | -5.7 | 5.7 | 1.2e-08 | -0.92 | 0.03 | 0.97 | FALSE |
4 | GTEx | Artery Tibial | SLC25A12 | 0.11 | 0.09 | lasso | 8 | 0.06 | 8.4e-06 | -5.2 | -5.4 | 8.0e-08 | 0.97 | 0.03 | 0.97 | FALSE |
5 | GTEx | Brain Cerebellar Hemisphere | DYNC1I2 | 0.32 | 0.24 | lasso | 7 | 0.26 | 2.0e-07 | -5.5 | 5.7 | 1.6e-08 | -0.93 | 0.03 | 0.96 | FALSE |
6 | GTEx | Brain Cerebellum | SLC25A12 | 0.24 | 0.22 | lasso | 7 | 0.17 | 1.3e-05 | -5.6 | -5.2 | 1.6e-07 | 0.96 | 0.03 | 0.97 | FALSE |
7 | GTEx | Cells Transformed fibroblasts | DYNC1I2 | 0.12 | 0.14 | lasso | 3 | 0.14 | 1.4e-10 | -5.5 | 5.6 | 2.3e-08 | -0.98 | 0.03 | 0.97 | FALSE |
8 | GTEx | Muscle Skeletal | DYNC1I2 | 0.11 | 0.12 | lasso | 2 | 0.12 | 6.5e-12 | -5.7 | 5.6 | 1.9e-08 | -0.99 | 0.03 | 0.97 | FALSE |
9 | GTEx | Skin Sun Exposed Lower leg | DYNC1I2 | 0.11 | 0.16 | lasso | 1 | 0.15 | 8.9e-13 | -5.5 | 5.5 | 2.9e-08 | -0.98 | 0.03 | 0.97 | FALSE |
10 | GTEx | Testis | DYNC1I2 | 0.13 | 0.02 | lasso | 4 | 0.01 | 1.1e-01 | -5.6 | 5.7 | 1.4e-08 | -0.98 | 0.03 | 0.83 | FALSE |
11 | ROSMAP | Brain Pre-frontal Cortex | AC068039.4 | 0.43 | 0.64 | enet | 35 | 0.65 | 1.6e-110 | -5.5 | -5.7 | 1.2e-08 | 0.99 | 0.03 | 0.97 | FALSE |
12 | YFS | Blood | SLC25A12 | 0.09 | 0.15 | lasso | 7 | 0.15 | 1.3e-45 | -5.5 | -5.5 | 3.6e-08 | 0.98 | 0.03 | 0.97 | FALSE |
13 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | DYNC1I2 | 0.05 | 0.06 | lasso | 4 | 0.05 | 6.3e-06 | -5.4 | 5.4 | 7.2e-08 | -0.96 | 0.01 | 0.99 | FALSE |