Best TWAS P=8.05e-09 · Best GWAS P=9.29e-08 conditioned to 4.73e-07
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Artery Aorta | TMBIM1 | 0.17 | 0.20 | enet | 29 | 0.19 | 1.2e-10 | 5.1 | -5.4 | 7.8e-08 | -0.01 | 0.03 | 0.96 | FALSE |
2 | GTEx | Artery Coronary | TMBIM1 | 0.22 | 0.08 | lasso | 1 | 0.03 | 3.6e-02 | 5.2 | -5.2 | 2.6e-07 | 0.00 | 0.03 | 0.79 | FALSE |
3 | GTEx | Artery Tibial | RP11-378A13.1 | 0.20 | 0.17 | enet | 13 | 0.24 | 7.6e-19 | 4.0 | -5.2 | 1.7e-07 | 0.01 | 0.04 | 0.96 | FALSE |
4 | GTEx | Cells EBV-transformed lymphocytes | RP11-378A13.1 | 0.18 | 0.14 | lasso | 6 | 0.13 | 4.6e-05 | 5.3 | -5.5 | 4.9e-08 | -0.03 | 0.03 | 0.93 | FALSE |
5 | GTEx | Cells Transformed fibroblasts | TMBIM1 | 0.15 | 0.25 | lasso | 3 | 0.27 | 2.2e-20 | 5.1 | -5.1 | 3.0e-07 | 0.01 | 0.02 | 0.98 | FALSE |
6 | GTEx | Heart Atrial Appendage | TMBIM1 | 0.11 | 0.09 | lasso | 2 | 0.08 | 1.8e-04 | 5.2 | -5.3 | 1.4e-07 | 0.01 | 0.02 | 0.97 | FALSE |
7 | GTEx | Skin Not Sun Exposed Suprapubic | RP11-378A13.1 | 0.26 | 0.25 | lasso | 8 | 0.28 | 5.6e-16 | 5.0 | -5.2 | 2.4e-07 | 0.00 | 0.04 | 0.96 | FALSE |
8 | GTEx | Skin Sun Exposed Lower leg | PNKD | 0.27 | 0.29 | lasso | 8 | 0.34 | 3.9e-29 | 5.0 | -5.1 | 2.8e-07 | 0.00 | 0.04 | 0.96 | FALSE |
9 | GTEx | Testis | PNKD | 0.20 | 0.19 | lasso | 3 | 0.19 | 1.2e-08 | 5.2 | -5.2 | 2.1e-07 | -0.01 | 0.02 | 0.98 | FALSE |
10 | GTEx | Testis | TMBIM1 | 0.27 | 0.13 | enet | 20 | 0.15 | 2.7e-07 | 5.0 | -5.8 | 8.0e-09 | -0.05 | 0.02 | 0.97 | TRUE |
11 | METSIM | Adipose | TMBIM1 | 0.14 | 0.15 | lasso | 11 | 0.14 | 1.3e-20 | 5.1 | -5.2 | 1.8e-07 | 0.02 | 0.02 | 0.98 | FALSE |
12 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | TMBIM1 | 0.10 | 0.04 | blup | 49 | 0.06 | 3.0e-03 | 5.1 | -5.3 | 1.5e-07 | 0.02 | 0.02 | 0.83 | FALSE |
13 | The Cancer Genome Atlas | Soft Tissue Sarcoma | TMBIM1 | 0.07 | 0.04 | blup | 49 | 0.03 | 4.8e-03 | 5.0 | -5.3 | 1.1e-07 | 0.02 | 0.02 | 0.71 | FALSE |
14 | The Cancer Genome Atlas | Thyroid Carcinoma | TMBIM1 | 0.02 | 0.02 | blup | 49 | 0.02 | 9.3e-03 | 5.1 | -5.5 | 4.2e-08 | 0.02 | 0.02 | 0.70 | FALSE |