Best TWAS P=2.09e-12 · Best GWAS P=2.07e-11 conditioned to 1.78e-05
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Artery Aorta | ARL14EP | 0.16 | 0.02 | lasso | 5 | 0.05 | 7.4e-04 | -6.5 | -5.2 | 2.2e-07 | 0.47 | 0.08 | 0.85 | FALSE |
2 | GTEx | Brain Cerebellum | ARL14EP | 0.33 | 0.25 | lasso | 10 | 0.26 | 3.7e-08 | 6.5 | -6.8 | 1.1e-11 | 0.40 | 0.02 | 0.98 | FALSE |
3 | GTEx | Colon Sigmoid | ARL14EP | 0.16 | 0.05 | lasso | 13 | 0.10 | 2.6e-04 | 6.3 | -5.5 | 5.0e-08 | 0.51 | 0.06 | 0.72 | FALSE |
4 | GTEx | Esophagus Gastroesophageal Junction | ARL14EP | 0.15 | 0.14 | lasso | 3 | 0.11 | 1.2e-04 | 6.5 | -6.6 | 5.3e-11 | 0.39 | 0.02 | 0.96 | FALSE |
5 | GTEx | Esophagus Mucosa | ARL14EP | 0.09 | 0.03 | enet | 11 | 0.05 | 1.8e-04 | 6.3 | -5.3 | 9.5e-08 | 0.49 | 0.06 | 0.86 | FALSE |
6 | GTEx | Esophagus Muscularis | ARL14EP | 0.18 | 0.20 | lasso | 8 | 0.19 | 9.5e-12 | 6.6 | -7.0 | 3.2e-12 | 0.46 | 0.02 | 0.98 | FALSE |
7 | GTEx | Lung | ARL14EP | 0.10 | 0.06 | lasso | 8 | 0.11 | 1.1e-08 | -2.6 | -5.7 | 9.5e-09 | 0.71 | 0.44 | 0.56 | FALSE |
8 | GTEx | Nerve Tibial | ARL14EP | 0.19 | 0.17 | enet | 22 | 0.18 | 4.2e-13 | 6.5 | -6.1 | 1.2e-09 | 0.46 | 0.02 | 0.98 | FALSE |
9 | GTEx | Pancreas | ARL14EP | 0.16 | 0.08 | lasso | 6 | 0.07 | 1.0e-03 | 6.2 | -7.0 | 2.1e-12 | 0.39 | 0.02 | 0.93 | TRUE |
10 | GTEx | Pituitary | ARL14EP | 0.30 | 0.28 | lasso | 4 | 0.22 | 3.0e-06 | 6.6 | -6.9 | 4.2e-12 | 0.55 | 0.02 | 0.95 | FALSE |
11 | ROSMAP | Brain Pre-frontal Cortex | MPPED2 | 0.25 | 0.29 | lasso | 7 | 0.29 | 4.4e-37 | 5.7 | -5.9 | 3.9e-09 | 0.54 | 0.10 | 0.90 | FALSE |
12 | ROSMAP | Brain Pre-frontal Cortex | ARL14EP | 0.08 | 0.07 | enet | 13 | 0.08 | 5.3e-10 | 6.6 | -6.0 | 1.8e-09 | 0.35 | 0.02 | 0.98 | FALSE |
13 | The Cancer Genome Atlas | Lung Adenocarcinoma | MPPED2 | 0.07 | 0.01 | blup | 149 | 0.03 | 7.0e-05 | 6.6 | -5.6 | 2.1e-08 | 0.38 | 0.02 | 0.95 | FALSE |