Best TWAS P=4.68e-12 · Best GWAS P=3.61e-16 conditioned to 0.000263
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | CommonMind | Brain Pre-frontal Cortex | BTBD7 | 0.04 | 0.04 | lasso | 2 | 0.03 | 1.8e-04 | -5.4 | 5.8 | 5.7e-09 | -0.43 | 0.89 | 0.05 | FALSE |
| 2 | GTEx | Cells Transformed fibroblasts | BTBD7 | 0.16 | 0.01 | lasso | 8 | 0.04 | 3.6e-04 | -7.1 | 6.9 | 4.7e-12 | -0.58 | 0.10 | 0.88 | TRUE |
| 3 | GTEx | Testis | BTBD7 | 0.19 | 0.00 | enet | 45 | 0.01 | 9.5e-02 | -5.0 | 5.9 | 3.4e-09 | -0.56 | 0.04 | 0.88 | FALSE |
| 4 | NTR | Blood | BTBD7 | 0.02 | 0.03 | lasso | 2 | 0.02 | 6.1e-08 | -5.4 | 5.8 | 5.3e-09 | -0.47 | 0.99 | 0.01 | FALSE |
| 5 | The Cancer Genome Atlas | Brain Lower Grade Glioma | C14orf142 | 0.11 | 0.04 | enet | 7 | 0.05 | 7.2e-07 | 3.7 | -5.7 | 1.5e-08 | 0.22 | 0.51 | 0.07 | TRUE |
| 6 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | BTBD7 | 0.02 | 0.01 | blup | 72 | 0.02 | 6.8e-03 | -6.8 | 6.5 | 6.0e-11 | -0.80 | 0.01 | 0.88 | FALSE |
| 7 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | UBR7 | 0.07 | 0.00 | blup | 52 | 0.02 | 1.1e-02 | -3.8 | 5.5 | 3.9e-08 | -0.24 | 0.02 | 0.07 | FALSE |
| 8 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | BTBD7 | 0.11 | 0.03 | blup | 72 | 0.02 | 8.0e-02 | -7.1 | 6.9 | 6.2e-12 | -0.56 | 0.02 | 0.79 | FALSE |