TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Hip circumference
:
←
→
chr19:29,606,361-31,013,761
Best TWAS P=2.99e-14 · Best GWAS P=4.19e-14 conditioned to 0.163
29.6M
29.8M
30M
30.2M
30.4M
30.6M
30.8M
31M
0
5
10
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
4
The Cancer Genome Atlas
Brain Lower Grade Glioma
CCNE1
0.03
0.03
enet
5
0.03
3.2e-04
7.6
-7.6
3.0e-14
-0.92
0
0.99
TRUE
3
The Cancer Genome Atlas
Bladder Urothelial Carcinoma
CCNE1
0.03
0.02
blup
39
0.02
4.5e-03
7.6
6.9
6.6e-12
0.90
0
0.98
FALSE
1
GTEx
Skin Not Sun Exposed Suprapubic
CCNE1
0.31
0.19
lasso
9
0.21
6.3e-12
7.5
6.8
1.5e-11
0.92
0
1.00
FALSE
2
GTEx
Skin Sun Exposed Lower leg
CCNE1
0.27
0.22
lasso
8
0.24
2.5e-19
7.6
6.7
1.8e-11
0.96
0
1.00
FALSE