Best TWAS P=4.71e-11 · Best GWAS P=1.25e-08 conditioned to 0.84
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | EXOSC10 | 0.06 | 0.08 | lasso | 2 | 0.07 | 6.8e-09 | 5.3 | 5.3 | 1.4e-07 | 0.92 | 0.08 | 0.92 | FALSE |
2 | GTEx | Brain Cerebellar Hemisphere | EXOSC10 | 0.23 | 0.10 | lasso | 3 | 0.12 | 6.4e-04 | 4.9 | 5.6 | 2.4e-08 | 0.97 | 0.02 | 0.90 | FALSE |
3 | GTEx | Brain Cerebellum | EXOSC10 | 0.33 | 0.16 | lasso | 6 | 0.18 | 3.8e-06 | 5.2 | 5.5 | 4.8e-08 | 0.93 | 0.04 | 0.95 | FALSE |
4 | GTEx | Brain Cerebellum | RP4-635E18.7 | 0.17 | 0.17 | lasso | 5 | 0.09 | 1.3e-03 | 5.2 | 5.4 | 7.3e-08 | 0.91 | 0.05 | 0.88 | FALSE |
5 | GTEx | Cells Transformed fibroblasts | CLCN6 | 0.08 | 0.02 | enet | 17 | 0.05 | 1.6e-04 | 5.2 | 5.1 | 3.0e-07 | 0.08 | 0.03 | 0.96 | FALSE |
6 | GTEx | Lung | EXOSC10 | 0.11 | 0.07 | lasso | 4 | 0.05 | 1.2e-04 | 5.2 | 5.1 | 3.1e-07 | 0.89 | 0.10 | 0.89 | FALSE |
7 | GTEx | Skin Not Sun Exposed Suprapubic | CLCN6 | 0.12 | 0.03 | lasso | 3 | 0.04 | 3.3e-03 | 5.5 | 5.9 | 2.8e-09 | 0.12 | 0.01 | 0.96 | FALSE |
8 | GTEx | Thyroid | RP4-635E18.7 | 0.07 | 0.02 | lasso | 2 | 0.01 | 5.5e-02 | 5.2 | 5.2 | 1.6e-07 | 0.86 | 0.06 | 0.64 | FALSE |
9 | ROSMAP | Brain Pre-frontal Cortex | PLOD1 | 0.11 | 0.03 | blup | 459 | 0.05 | 1.3e-07 | 4.3 | 5.4 | 8.0e-08 | 0.09 | 0.46 | 0.51 | FALSE |
10 | ROSMAP | Brain Pre-frontal Cortex | EXOSC10 | 0.06 | 0.06 | lasso | 2 | 0.06 | 4.9e-08 | 5.3 | 5.3 | 1.2e-07 | 0.92 | 0.07 | 0.93 | FALSE |
11 | ROSMAP | Brain Pre-frontal Cortex | MTOR | 0.07 | 0.05 | bslmm | 423 | 0.04 | 2.0e-06 | 4.7 | 5.9 | 2.8e-09 | 0.87 | 0.24 | 0.76 | TRUE |
12 | The Cancer Genome Atlas | Breast Invasive Carcinoma | CLCN6 | 0.06 | 0.06 | blup | 104 | 0.06 | 5.0e-12 | 3.5 | 5.3 | 1.2e-07 | 0.07 | 0.47 | 0.51 | FALSE |
13 | The Cancer Genome Atlas | Colon Adenocarcinoma | CLCN6 | 0.14 | 0.05 | blup | 104 | 0.09 | 1.2e-05 | 5.2 | 5.9 | 3.4e-09 | 0.14 | 0.03 | 0.96 | FALSE |
14 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | MTOR | 0.02 | 0.02 | blup | 54 | 0.02 | 5.4e-03 | 5.6 | 5.6 | 1.8e-08 | 0.97 | 0.02 | 0.90 | FALSE |
15 | The Cancer Genome Atlas | Brain Lower Grade Glioma | MTOR | 0.03 | 0.01 | blup | 54 | 0.02 | 5.9e-03 | 5.6 | 5.5 | 2.9e-08 | 0.93 | 0.03 | 0.70 | FALSE |
16 | The Cancer Genome Atlas | Lung Adenocarcinoma | CLCN6 | 0.06 | 0.04 | blup | 104 | 0.04 | 5.2e-06 | 5.2 | 5.6 | 2.6e-08 | 0.10 | 0.01 | 0.98 | FALSE |
17 | The Cancer Genome Atlas | Thyroid Carcinoma | CLCN6 | 0.08 | 0.02 | blup | 104 | 0.05 | 2.5e-05 | 4.5 | 6.6 | 4.7e-11 | 0.06 | 0.15 | 0.83 | TRUE |