TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Standing height
:
←
→
chr14:30,395,066-31,895,974
Best TWAS P=1.17e-07 · Best GWAS P=1.11e-07 conditioned to 0.049
30.4M
30.6M
30.8M
31M
31.2M
31.4M
31.6M
31.8M
0
2
4
6
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
3
GTEx
Esophagus Mucosa
SCFD1
0.09
0.12
enet
11
0.11
1.0e-07
5.2
-5.3
1.2e-07
0.76
0.03
0.97
TRUE
4
GTEx
Skin Not Sun Exposed Suprapubic
SCFD1
0.14
0.05
enet
26
0.08
2.3e-05
5.2
-5.3
1.5e-07
0.53
0.03
0.96
FALSE
2
GTEx
Colon Transverse
SCFD1
0.14
0.13
lasso
3
0.13
8.1e-07
5.2
-5.2
2.0e-07
0.67
0.02
0.97
FALSE
5
GTEx
Thyroid
SCFD1
0.10
0.08
enet
11
0.07
2.7e-06
4.9
-5.2
2.0e-07
0.71
0.03
0.97
FALSE
1
GTEx
Adipose Subcutaneous
SCFD1
0.12
0.11
lasso
2
0.10
8.5e-09
5.2
-5.2
2.3e-07
0.69
0.01
0.98
FALSE