TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Standing height
:
←
→
chr14:69,639,433-71,198,551
Best TWAS P=5.73e-16 · Best GWAS P=1.6e-19 conditioned to 9.63e-06
69.6M
69.8M
70M
70.2M
70.4M
70.6M
70.8M
71M
71.2M
0
5
10
15
20
physical position
-log10 P
Conditional
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
5
The Cancer Genome Atlas
Soft Tissue Sarcoma
SMOC1
0.07
0.00
blup
188
0.02
1.9e-02
9.0
-8.1
5.7e-16
-0.76
0.00
0.94
TRUE
3
GTEx
Artery Tibial
SMOC1
0.33
0.32
lasso
10
0.33
3.0e-26
-7.1
-7.5
7.6e-14
-0.79
1.00
0.00
FALSE
2
GTEx
Artery Coronary
SMOC1
0.24
0.33
lasso
2
0.32
1.9e-11
-7.1
-7.1
1.5e-12
-0.79
0.84
0.15
FALSE
4
The Cancer Genome Atlas
Brain Lower Grade Glioma
SLC8A3
0.05
0.00
blup
156
0.02
1.4e-03
5.4
6.8
1.4e-11
0.59
0.02
0.29
FALSE
1
GTEx
Artery Aorta
SMOC1
0.14
0.12
enet
11
0.09
6.8e-06
5.5
-6.5
8.2e-11
-0.72
0.09
0.90
FALSE