TWAS
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Usage
Models
Genes
Traits
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Traits
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Standing height
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chr2:32,156,394-34,319,972
Best TWAS P=3.76e-18 · Best GWAS P=2.41e-30 conditioned to 3.41e-23
32.5M
33M
33.5M
34M
0
5
10
15
20
25
30
physical position
-log10 P
Conditional
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
3
GTEx
Cells Transformed fibroblasts
LTBP1
0.48
0.51
enet
58
0.51
2.4e-43
-7.9
8.7
3.8e-18
-0.07
1.00
0.00
TRUE
1
GTEx
Adrenal Gland
TTC27
0.17
0.00
enet
23
0.05
6.9e-03
-2.2
7.3
2.4e-13
-0.07
0.08
0.18
TRUE
4
The Cancer Genome Atlas
Liver Hepatocellular Carcinoma
LTBP1
0.21
0.08
lasso
5
0.08
1.8e-04
4.2
-6.9
6.1e-12
0.07
0.13
0.22
TRUE
2
GTEx
Artery Tibial
LTBP1
0.10
0.04
enet
12
0.03
1.5e-03
-7.6
8.2
1.9e-16
-0.11
0.80
0.05
FALSE