Best TWAS P=1.16e-07 · Best GWAS P=8.46e-08 conditioned to 3.12e-08
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | CommonMind | Brain Pre-frontal Cortex | SLC2A9 | 0.06 | 0.01 | blup | 565 | 0.02 | 6.2e-04 | -4.7 | -5.3 | 1.3e-07 | 0.06 | 0.04 | 0.92 | FALSE |
| 2 | GTEx | Lung | SLC2A9 | 0.06 | 0.00 | lasso | 5 | 0.00 | 5.7e-01 | -5.0 | -5.3 | 1.2e-07 | -0.03 | 0.04 | 0.88 | TRUE |
| 3 | The Cancer Genome Atlas | Thyroid Carcinoma | WDR1 | 0.12 | 0.05 | blup | 111 | 0.06 | 2.4e-06 | -3.7 | 5.1 | 3.0e-07 | -0.04 | 0.04 | 0.95 | FALSE |