Best TWAS P=3.07e-12 · Best GWAS P=3.81e-13 conditioned to 1
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | ROSMAP | Brain Pre-frontal Cortex | STK4 | 0.12 | 0.12 | enet | 16 | 0.13 | 2.9e-16 | -7.3 | 7.0 | 3.1e-12 | -0.99 | 0.00 | 1.00 | TRUE |
| 2 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | STK4 | 0.04 | 0.03 | blup | 88 | 0.03 | 7.1e-05 | 4.4 | 5.3 | 1.5e-07 | -0.78 | 0.27 | 0.68 | FALSE |