TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Vascular/heart problems diagnosed by doctor
:
←
→
chr12:121,146,219-123,131,824
Best TWAS P=6.82e-15 · Best GWAS P=1.31e-14 conditioned to 1
121.5M
122M
122.5M
123M
0
5
10
15
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
1
GTEx
Breast Mammary Tissue (Female)
KDM2B
0.13
0.00
lasso
3
0.01
1.2e-01
7.547
-7.8
6.8e-15
-0.91
0.03
0.36
TRUE
4
GTEx
Testis
RNF34
0.18
0.20
lasso
3
0.17
5.2e-08
7.547
-7.5
7.5e-14
-0.97
0.02
0.98
TRUE
6
METSIM
Adipose
WDR66
0.04
0.00
blup
341
0.01
1.4e-02
-0.053
5.6
2.1e-08
0.18
0.05
0.04
TRUE
2
GTEx
Lung
KDM2B
0.10
0.06
lasso
3
0.05
1.4e-04
7.519
-7.5
4.6e-14
-0.97
0.02
0.98
FALSE
5
GTEx
Thyroid
KDM2B
0.13
0.05
enet
20
0.05
8.1e-05
5.295
-7.1
9.7e-13
-0.91
0.02
0.98
FALSE
3
GTEx
Nerve Tibial
KDM2B
0.08
0.04
enet
16
0.05
1.6e-04
7.547
-5.4
5.4e-08
-0.81
0.03
0.96
FALSE