1231 significantly associated models · 331 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 1 | 752566 | 2061969 | 1 | 1 | 2.4e-07 | 5.0e-06 | 5.1e-03 | 62 | RP4-758J18.10 |
2 | 1 | 7715776 | 9571422 | 2 | 1 | 1.9e-08 | 4.3e-08 | 2.5e-01 | 96 | RP5-1115A15.1 |
3 | 1 | 11060075 | 12600396 | 5 | 2 | 5.5e-25 | 5.4e-26 | 4.4e-05 | 85 | CLCN6 |
4 | 1 | 20373107 | 21742737 | 1 | 1 | 2.8e-07 | 1.8e-07 | 3.9e-02 | 84 | RP5-930J4.4 |
5 | 1 | 26428864 | 28406173 | 5 | 2 | 5.9e-10 | 3.7e-08 | 6.8e-01 | 99 | FCN3 PIGV |
6 | 1 | 42542658 | 43978837 | 3 | 1 | 5.4e-08 | 6.2e-08 | 8.5e-02 | 90 | RP5-994D16.9 |
7 | 1 | 88621347 | 90134392 | 2 | 1 | 2.8e-12 | 5.7e-12 | 9.0e-02 | 94 | GTF2B |
8 | 1 | 112312154 | 113941737 | 5 | 2 | 2.9e-15 | 4.1e-17 | 7.9e-08 | 59 | CAPZA1 RHOC |
9 | 1 | 115486678 | 116932921 | 1 | 1 | 2.3e-07 | 1.3e-12 | 5.9e-11 | 15 | VANGL1 |
10 | 1 | 227217340 | 228663659 | 1 | 1 | 5.1e-08 | 3.4e-09 | 9.0e-05 | 56 | SNAP47 |
11 | 1 | 230142626 | 231548480 | 1 | 1 | 2.5e-12 | 7.1e-11 | 5.4e-02 | 91 | AGT |
12 | 2 | 24021231 | 26068509 | 3 | 2 | 1.4e-08 | 1.2e-06 | 5.0e-01 | 98 | ADCY3 EFR3B |
13 | 2 | 36778887 | 38245716 | 1 | 1 | 4.5e-09 | 3.8e-08 | 1.0e+00 | 100 | PRKD3 |
14 | 2 | 158621356 | 160236990 | 1 | 1 | 3.1e-07 | 2.6e-08 | 6.6e-04 | 62 | PKP4 |
15 | 2 | 181042370 | 184084221 | 3 | 2 | 3.4e-09 | 1.4e-09 | 1.1e-02 | 82 | PDE1A UBE2E3 |
16 | 2 | 218622292 | 220128895 | 1 | 1 | 1.9e-07 | 1.9e-04 | 1.4e-01 | 84 | USP37 |
17 | 3 | 10617048 | 12239931 | 1 | 1 | 9.2e-08 | 1.3e-09 | 3.9e-03 | 77 | ATG7 |
18 | 3 | 26563909 | 28211713 | 2 | 1 | 3.0e-16 | 1.6e-17 | 1.1e-02 | 91 | SLC4A7 |
19 | 3 | 38812165 | 40267321 | 1 | 1 | 2.5e-07 | 1.0e-05 | 2.9e-03 | 54 | MOBP |
20 | 3 | 47204518 | 49365269 | 8 | 1 | 9.5e-12 | 7.9e-12 | 1.0e+00 | 100 | FCF1P2 |
21 | 3 | 133088362 | 134666475 | 1 | 1 | 4.7e-08 | 5.4e-09 | 8.4e-03 | 80 | RYK |
22 | 3 | 135273949 | 136746974 | 1 | 1 | 1.5e-07 | 1.4e-09 | 1.7e-03 | 73 | PCCB |
23 | 3 | 137189600 | 139050702 | 5 | 1 | 1.7e-11 | 1.2e-11 | 1.5e-01 | 96 | DBR1 |
24 | 3 | 157125828 | 158980014 | 2 | 1 | 1.7e-07 | 1.8e-06 | 3.4e-01 | 96 | RP11-538P18.2 |
25 | 4 | 17104059 | 18507692 | 2 | 1 | 1.6e-09 | 7.5e-10 | 6.1e-03 | 80 | DCAF16 |
26 | 4 | 25880334 | 27452482 | 1 | 2 | 1.2e-10 | 1.1e-14 | 5.1e-09 | 43 | TBC1D19 |
27 | 4 | 37915462 | 39361551 | 1 | 1 | 2.2e-07 | 4.2e-08 | 1.3e-06 | 22 | RP11-617D20.1 |
28 | 4 | 80488345 | 82578407 | 2 | 1 | 7.9e-18 | 2.5e-58 | 1.8e-42 | 28 | C4orf22 |
29 | 4 | 102868793 | 104627833 | 5 | 1 | 6.4e-12 | 1.2e-10 | 9.3e-01 | 100 | CISD2 |
30 | 4 | 155890241 | 157354250 | 2 | 1 | 2.4e-09 | 1.1e-13 | 6.7e-13 | 7 | RP11-588K22.2 |
31 | 5 | 130830617 | 132425049 | 8 | 1 | 1.2e-09 | 2.3e-09 | 4.5e-03 | 77 | P4HA2-AS1 |
32 | 5 | 147516165 | 148894875 | 1 | 1 | 1.9e-07 | 2.9e-10 | 9.5e-07 | 40 | ADRB2 |
33 | 6 | 42586058 | 44034691 | 2 | 1 | 1.9e-12 | 8.7e-13 | 1.0e+00 | 100 | ZNF318 |
34 | 6 | 57608708 | 58770624 | 1 | 1 | 1.8e-07 | 5.3e-07 | 8.7e-03 | 73 | LINC00680 |
35 | 6 | 78880271 | 80486611 | 2 | 1 | 3.3e-09 | 1.2e-08 | 3.1e-01 | 97 | PHIP |
36 | 6 | 117078784 | 118613435 | 2 | 2 | 6.9e-08 | 1.3e-08 | 1.2e-08 | 0 | DCBLD1 GOPC |
37 | 6 | 133961374 | 134468561 | 1 | 1 | 6.9e-09 | 5.8e-11 | 1.8e-03 | 77 | TCF21 |
38 | 7 | 1787236 | 3264728 | 2 | 1 | 6.7e-11 | 1.5e-10 | 1.0e+00 | 100 | LFNG |
39 | 7 | 6502367 | 7988091 | 1 | 1 | 2.0e-14 | 7.8e-11 | 7.6e-02 | 93 | C1GALT1 |
40 | 7 | 26969253 | 27533292 | 2 | 1 | 2.5e-12 | 4.1e-14 | 2.3e-03 | 84 | HOXA10 |
41 | 7 | 73425238 | 75255633 | 5 | 1 | 8.2e-09 | 1.6e-08 | 4.3e-02 | 87 | STAG3L2 |
42 | 7 | 129342404 | 130779678 | 2 | 2 | 7.1e-11 | 5.6e-14 | 2.2e-05 | 68 | CEP41 ZC3HC1 |
43 | 8 | 8092025 | 13120332 | 19 | 2 | 1.1e-13 | 1.5e-13 | 1.8e-03 | 82 | MSRA NEIL2 |
44 | 8 | 29996824 | 31433801 | 1 | 1 | 5.7e-09 | 9.8e-10 | 6.2e-02 | 91 | TEX15 |
45 | 8 | 82017372 | 83452091 | 1 | 1 | 3.8e-08 | 4.8e-09 | 1.6e-02 | 83 | SNX16 |
46 | 8 | 95213858 | 96825195 | 3 | 1 | 5.3e-09 | 2.7e-08 | 1.9e-01 | 94 | NDUFAF6 |
47 | 8 | 102002608 | 103832256 | 2 | 1 | 3.5e-09 | 1.3e-09 | 6.6e-04 | 68 | KB-1107E3.1 |
48 | 10 | 18221643 | 19601824 | 2 | 2 | 6.8e-11 | 1.9e-17 | 3.8e-15 | 14 | CACNB2 NSUN6 |
49 | 10 | 62473976 | 65606229 | 4 | 2 | 5.4e-12 | 6.4e-28 | 7.5e-26 | 8 | NRBF2 TMEM26 |
50 | 10 | 95379543 | 96818402 | 1 | 1 | 2.6e-08 | 1.5e-10 | 5.8e-07 | 39 | NOC3L |
51 | 10 | 103313599 | 105850787 | 8 | 1 | 2.1e-15 | 1.2e-16 | 4.1e-03 | 88 | NT5C2 |
52 | 10 | 115244596 | 116689519 | 3 | 3 | 1.9e-12 | 1.9e-19 | 2.6e-08 | 62 | ADRB1 C10orf118 TDRD1 |
53 | 11 | 1213806 | 2705175 | 5 | 2 | 3.6e-18 | 3.8e-20 | 7.1e-03 | 91 | LSP1 TNNT3 |
54 | 11 | 9003306 | 10471931 | 1 | 1 | 6.2e-10 | 2.9e-12 | 2.3e-04 | 72 | SWAP70 |
55 | 11 | 15741673 | 17001235 | 1 | 1 | 6.3e-09 | 1.3e-15 | 2.0e-09 | 44 | SOX6 |
56 | 11 | 42881882 | 44596817 | 2 | 1 | 1.6e-08 | 9.2e-10 | 2.9e-03 | 76 | HSD17B12 |
57 | 11 | 46010847 | 48783497 | 19 | 1 | 5.4e-21 | 1.8e-18 | 7.1e-07 | 68 | ACP2 |
58 | 11 | 64721908 | 66333072 | 3 | 1 | 5.7e-12 | 3.8e-12 | 6.9e-06 | 58 | RNASEH2C |
59 | 11 | 99859184 | 101559718 | 2 | 1 | 4.6e-36 | 1.4e-34 | 1.4e-01 | 98 | TMEM133 |
60 | 11 | 106485489 | 108027561 | 2 | 1 | 2.4e-10 | 2.0e-11 | 5.9e-03 | 83 | CWF19L2 |
61 | 11 | 110721187 | 112491227 | 5 | 1 | 1.3e-10 | 1.3e-10 | 1.0e+00 | 100 | SIK2 |
62 | 12 | 47407397 | 49195124 | 3 | 2 | 1.4e-07 | 1.1e-07 | 1.2e-04 | 47 | RP1-197B17.3 SENP1 |
63 | 12 | 49827409 | 51256065 | 2 | 1 | 5.8e-08 | 3.0e-10 | 2.2e-08 | 21 | CERS5 |
64 | 12 | 54158993 | 54760824 | 4 | 1 | 3.5e-09 | 1.6e-09 | 2.8e-02 | 87 | FLJ12825 |
65 | 12 | 69057879 | 70476863 | 1 | 1 | 4.7e-10 | 3.4e-09 | 2.7e-01 | 96 | YEATS4 |
66 | 12 | 89116708 | 90799212 | 3 | 1 | 3.2e-13 | 2.9e-22 | 4.8e-14 | 40 | ATP2B1 |
67 | 12 | 109591369 | 111015121 | 2 | 1 | 8.0e-08 | 1.3e-06 | 2.3e-01 | 94 | TCHP |
68 | 12 | 111102574 | 113517494 | 15 | 2 | 1.5e-21 | 7.2e-33 | 2.3e-08 | 78 | ADAM1A SH2B3 |
69 | 12 | 121146219 | 123131824 | 3 | 3 | 6.8e-15 | 1.3e-14 | 1.0e+00 | 100 | KDM2B RNF34 WDR66 |
70 | 14 | 103349176 | 104866687 | 4 | 1 | 1.1e-07 | 2.0e-07 | 1.0e+00 | 100 | C14orf153 |
71 | 15 | 40360741 | 42749023 | 8 | 1 | 5.4e-12 | 8.9e-12 | 1.7e-01 | 96 | CHP1 |
72 | 15 | 67138238 | 68789191 | 1 | 1 | 1.0e-08 | 1.2e-08 | 2.4e-01 | 96 | MAP2K5 |
73 | 15 | 73933444 | 76108550 | 14 | 10 | 3.7e-22 | 5.4e-22 | 1.0e+00 | 100 | ARID3B COX5A CSK MPI RPP25 UBL7 ULK3 |
74 | 15 | 80377452 | 81936479 | 2 | 1 | 4.1e-11 | 7.8e-14 | 2.9e-04 | 76 | FAM108C1 |
75 | 15 | 90712555 | 92187978 | 3 | 3 | 7.8e-43 | 3.7e-32 | 6.3e-01 | 100 | FES FURIN |
76 | 16 | 3025993 | 5441125 | 4 | 3 | 3.0e-11 | 1.1e-08 | 1.3e-05 | 42 | AC006111.1 MGRN1 |
77 | 16 | 24614505 | 25167985 | 1 | 1 | 3.9e-08 | 2.0e-07 | 1.0e+00 | 100 | SLC5A11 |
78 | 16 | 29711343 | 31833122 | 12 | 2 | 1.2e-10 | 8.9e-11 | 1.0e+00 | 100 | FAM57B VKORC1 |
79 | 16 | 81230341 | 81993974 | 1 | 1 | 3.4e-14 | 8.3e-13 | 1.1e-02 | 88 | CMIP |
80 | 16 | 89013848 | 90172696 | 8 | 1 | 9.3e-12 | 1.2e-11 | 8.7e-02 | 94 | CHMP1A |
81 | 17 | 3371501 | 4766937 | 1 | 1 | 9.3e-08 | 3.7e-07 | 4.6e-01 | 98 | RP11-810M2.2 |
82 | 17 | 6754828 | 8484683 | 8 | 3 | 2.7e-09 | 3.4e-09 | 1.0e+00 | 100 | CYB5D1 SENP3 SLC2A4 |
83 | 17 | 42976114 | 43383100 | 1 | 1 | 3.1e-08 | 9.4e-07 | 3.2e-01 | 96 | HEXIM1 |
84 | 17 | 46258510 | 48139500 | 7 | 8 | 1.2e-15 | 1.8e-17 | NaN | NaN | AC091133.1 RP11-463M16.4 SNF8 UBE2Z ZNF652 |
85 | 17 | 60858059 | 62279811 | 2 | 1 | 4.8e-15 | 4.8e-15 | 1.0e+00 | 100 | ACE |
86 | 17 | 73220999 | 74629867 | 1 | 1 | 3.1e-07 | 3.0e-07 | 1.9e-01 | 93 | FBF1 |
87 | 17 | 78665405 | 80023050 | 1 | 1 | 1.2e-07 | 1.7e-05 | 3.9e-04 | 32 | RP11-1055B8.4 |
88 | 19 | 1163934 | 2560423 | 3 | 2 | 6.2e-08 | 2.0e-08 | 1.0e+00 | 100 | CTB-31O20.6 KLF16 |
89 | 19 | 7793502 | 9200017 | 1 | 1 | 1.9e-07 | 1.3e-06 | 6.8e-01 | 99 | MARCH2 |
90 | 19 | 16462417 | 18180451 | 4 | 2 | 5.9e-13 | 3.1e-14 | 1.0e+00 | 100 | CTD-3032J10.3 MYO9B |
91 | 19 | 48918157 | 49452462 | 2 | 1 | 3.3e-08 | 1.7e-07 | 4.5e-01 | 98 | NTN5 |
92 | 20 | 7419920 | 9648826 | 1 | 2 | 3.7e-11 | 2.5e-18 | 6.3e-07 | 67 | PLCB1 |
93 | 20 | 29927166 | 31615615 | 3 | 2 | 3.4e-09 | 1.1e-09 | 1.9e-07 | 27 | C20orf160 TSPY26P |
94 | 20 | 56858751 | 58262841 | 3 | 3 | 8.1e-20 | 1.4e-34 | 2.5e-10 | 73 | NELFCD TH1L ZNF831 |
95 | 20 | 61522825 | 62912463 | 8 | 6 | 5.7e-14 | 2.2e-12 | 1.0e+00 | 100 | GMEB2 OPRL1 RGS19 TCEA2 ZBTB46 |
96 | 21 | 44251223 | 45879403 | 3 | 1 | 1.6e-09 | 2.4e-10 | 2.1e-02 | 87 | PDXK |
97 | 22 | 29033458 | 29702654 | 1 | 1 | 1.8e-10 | 1.7e-06 | 2.6e-01 | 94 | ZNRF3 |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
GTEx | Ovary | 10 | 1.10 | 3.2 |
GTEx | Prostate | 13 | 1.56 | 3.1 |
GTEx | Stomach | 18 | 1.24 | 3.1 |
GTEx | Artery Aorta | 35 | 1.18 | 3.0 |
GTEx | Brain Cerebellum | 17 | 0.86 | 3.0 |
GTEx | Brain Cortex | 7 | 0.68 | 3.0 |
GTEx | Brain Frontal Cortex BA9 | 12 | 1.30 | 3.0 |
GTEx | Adipose Subcutaneous | 27 | 0.77 | 2.9 |
GTEx | Adipose Visceral Omentum | 17 | 0.83 | 2.9 |
GTEx | Adrenal Gland | 14 | 0.96 | 2.9 |
GTEx | Artery Tibial | 36 | 0.96 | 2.9 |
GTEx | Brain Cerebellar Hemisphere | 18 | 1.21 | 2.9 |
GTEx | Brain Nucleus accumbens basal ganglia | 5 | 0.58 | 2.9 |
GTEx | Esophagus Gastroesophageal Junction | 13 | 0.90 | 2.9 |
GTEx | Heart Left Ventricle | 15 | 0.98 | 2.9 |
GTEx | Lung | 23 | 0.80 | 2.9 |
GTEx | Muscle Skeletal | 25 | 0.87 | 2.9 |
GTEx | Pancreas | 11 | 0.67 | 2.9 |
GTEx | Pituitary | 9 | 0.81 | 2.9 |
GTEx | Skin Not Sun Exposed Suprapubic | 25 | 1.02 | 2.9 |
GTEx | Skin Sun Exposed Lower leg | 31 | 0.85 | 2.9 |
GTEx | Small Intestine Terminal Ileum | 5 | 1.08 | 2.9 |
ROSMAP | Brain Pre-frontal Cortex | 43 | 0.98 | 2.9 |
GTEx | Artery Coronary | 7 | 0.59 | 2.8 |
GTEx | Brain Caudate basal ganglia | 3 | 0.33 | 2.8 |
GTEx | Brain Hippocampus | 4 | 0.76 | 2.8 |
GTEx | Breast Mammary Tissue | 15 | 0.76 | 2.8 |
GTEx | Breast Mammary Tissue (Male) | 14 | 1.17 | 2.8 |
GTEx | Cells EBV-transformed lymphocytes | 6 | 0.42 | 2.8 |
GTEx | Cells Transformed fibroblasts | 36 | 0.86 | 2.8 |
GTEx | Colon Sigmoid | 13 | 0.89 | 2.8 |
GTEx | Colon Transverse | 17 | 0.82 | 2.8 |
GTEx | Esophagus Mucosa | 33 | 0.99 | 2.8 |
GTEx | Esophagus Muscularis | 31 | 0.96 | 2.8 |
GTEx | Heart Atrial Appendage | 13 | 0.82 | 2.8 |
GTEx | Spleen | 9 | 0.64 | 2.8 |
GTEx | Testis | 25 | 0.79 | 2.8 |
GTEx | Thyroid | 35 | 0.88 | 2.8 |
GTEx | Uterus | 7 | 1.23 | 2.8 |
GTEx | Vagina | 5 | 0.79 | 2.8 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 20 | 0.97 | 2.8 |
GTEx | Breast Mammary Tissue (Female) | 14 | 0.85 | 2.7 |
GTEx | Nerve Tibial | 33 | 0.76 | 2.7 |
GTEx | Whole Blood | 17 | 0.85 | 2.7 |
NTR | Blood | 16 | 0.67 | 2.7 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 34 | 0.83 | 2.7 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 20 | 0.68 | 2.7 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 16 | 0.96 | 2.7 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 2 | 0.37 | 2.7 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 14 | 0.83 | 2.7 |
GTEx | Brain Hypothalamus | 3 | 0.51 | 2.6 |
GTEx | Brain Putamen basal ganglia | 4 | 0.64 | 2.6 |
GTEx | Liver | 5 | 0.70 | 2.6 |
CommonMind | Brain Pre-frontal Cortex | 42 | 0.78 | 2.6 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 34 | 0.77 | 2.6 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 7 | 0.64 | 2.6 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 4 | 0.39 | 2.6 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 19 | 0.70 | 2.6 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 14 | 0.68 | 2.6 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 28 | 0.65 | 2.6 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 14 | 0.56 | 2.6 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 13 | 0.82 | 2.6 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 11 | 0.83 | 2.6 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 4 | 0.58 | 2.6 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 5 | 0.47 | 2.6 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 5 | 0.39 | 2.6 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 3 | 0.59 | 2.6 |
METSIM | Adipose | 22 | 0.48 | 2.5 |
YFS | Blood | 29 | 0.63 | 2.5 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 9 | 0.54 | 2.5 |
The Cancer Genome Atlas | Esophageal Carcinoma | 1 | 0.15 | 2.5 |
The Cancer Genome Atlas | Thyroid Carcinoma | 39 | 0.76 | 2.5 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 4 | 0.36 | 2.4 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 24 | 0.52 | 2.4 |