Best TWAS P=8.84e-13 · Best GWAS P=2.78e-11 conditioned to 0.279
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | EVI5 | 0.03 | 0.01 | blup | 335 | 0.02 | 1.3e-03 | 6.6 | 6.5 | 7.9e-11 | 0.92 | 0.02 | 0.96 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | FAM69A | 0.10 | 0.13 | lasso | 4 | 0.14 | 1.2e-16 | 4.8 | 5.5 | 3.1e-08 | 0.76 | 0.98 | 0.02 | FALSE |
3 | GTEx | Adipose Subcutaneous | EVI5 | 0.09 | 0.07 | lasso | 3 | 0.09 | 1.2e-07 | 4.8 | 5.3 | 1.3e-07 | 0.66 | 0.50 | 0.50 | FALSE |
4 | GTEx | Adipose Visceral Omentum | EVI5 | 0.13 | 0.08 | lasso | 2 | 0.07 | 2.3e-04 | 5.4 | 5.3 | 1.1e-07 | 0.64 | 0.44 | 0.19 | FALSE |
5 | GTEx | Artery Tibial | EVI5 | 0.08 | 0.08 | lasso | 10 | 0.12 | 9.5e-10 | 6.2 | 7.1 | 1.7e-12 | 0.88 | 0.10 | 0.90 | FALSE |
6 | GTEx | Brain Caudate basal ganglia | EVI5 | 0.10 | 0.00 | enet | 19 | 0.01 | 1.7e-01 | 6.6 | 6.4 | 1.7e-10 | 0.82 | 0.04 | 0.68 | FALSE |
7 | GTEx | Brain Cortex | EVI5 | 0.25 | 0.33 | lasso | 13 | 0.30 | 4.1e-09 | 6.6 | 6.5 | 7.8e-11 | 0.99 | 0.02 | 0.98 | FALSE |
8 | GTEx | Brain Hypothalamus | EVI5 | 0.16 | 0.12 | lasso | 13 | 0.05 | 2.1e-02 | 6.6 | 6.5 | 9.0e-11 | 1.00 | 0.02 | 0.86 | FALSE |
9 | GTEx | Breast Mammary Tissue | EVI5 | 0.07 | 0.06 | lasso | 4 | 0.07 | 2.3e-04 | 6.6 | 6.6 | 5.3e-11 | 0.99 | 0.02 | 0.98 | FALSE |
10 | GTEx | Breast Mammary Tissue (Male) | EVI5 | 0.17 | 0.03 | lasso | 10 | 0.08 | 5.9e-03 | 6.2 | 5.6 | 2.3e-08 | 0.82 | 0.04 | 0.57 | FALSE |
11 | GTEx | Cells Transformed fibroblasts | EVI5 | 0.18 | 0.11 | enet | 28 | 0.20 | 5.9e-15 | 5.4 | 6.4 | 1.7e-10 | 0.83 | 0.11 | 0.89 | FALSE |
12 | GTEx | Colon Sigmoid | EVI5 | 0.13 | 0.16 | lasso | 3 | 0.12 | 7.0e-05 | 6.6 | 6.6 | 3.3e-11 | 1.00 | 0.01 | 0.98 | FALSE |
13 | GTEx | Colon Transverse | EVI5 | 0.21 | 0.08 | lasso | 9 | 0.14 | 4.2e-07 | 3.5 | 5.2 | 1.6e-07 | 0.77 | 0.03 | 0.97 | FALSE |
14 | GTEx | Esophagus Gastroesophageal Junction | EVI5 | 0.22 | 0.10 | lasso | 7 | 0.06 | 2.3e-03 | 5.4 | 6.3 | 2.6e-10 | 0.84 | 0.04 | 0.96 | FALSE |
15 | GTEx | Esophagus Mucosa | EVI5 | 0.12 | 0.19 | lasso | 4 | 0.19 | 6.0e-13 | 5.4 | 6.2 | 7.7e-10 | 0.83 | 0.04 | 0.96 | FALSE |
16 | GTEx | Esophagus Muscularis | EVI5 | 0.16 | 0.23 | lasso | 5 | 0.23 | 4.9e-14 | 5.4 | 5.5 | 2.8e-08 | 0.70 | 0.52 | 0.48 | FALSE |
17 | GTEx | Heart Atrial Appendage | EVI5 | 0.09 | 0.06 | lasso | 7 | 0.05 | 4.2e-03 | 6.6 | 6.8 | 1.4e-11 | 1.00 | 0.02 | 0.95 | FALSE |
18 | GTEx | Heart Left Ventricle | EVI5 | 0.07 | 0.11 | lasso | 5 | 0.08 | 7.7e-05 | 6.6 | 6.7 | 2.6e-11 | 0.99 | 0.02 | 0.98 | FALSE |
19 | GTEx | Lung | EVI5 | 0.11 | 0.08 | lasso | 11 | 0.13 | 7.0e-10 | 5.3 | 6.2 | 4.7e-10 | 0.86 | 0.03 | 0.97 | FALSE |
20 | GTEx | Nerve Tibial | EVI5 | 0.17 | 0.13 | enet | 25 | 0.18 | 4.5e-13 | 5.5 | 5.8 | 7.6e-09 | 0.84 | 0.09 | 0.91 | FALSE |
21 | GTEx | Skin Not Sun Exposed Suprapubic | EVI5 | 0.07 | 0.05 | lasso | 6 | 0.08 | 2.2e-05 | 5.5 | 5.9 | 4.5e-09 | 0.72 | 0.06 | 0.92 | FALSE |
22 | GTEx | Uterus | EVI5 | 0.23 | 0.12 | enet | 27 | 0.16 | 4.3e-04 | 6.6 | 6.9 | 6.8e-12 | 0.90 | 0.04 | 0.88 | FALSE |
23 | GTEx | Whole Blood | EVI5 | 0.03 | 0.01 | lasso | 2 | 0.01 | 6.8e-02 | 6.6 | 6.8 | 1.0e-11 | 0.96 | 0.02 | 0.97 | FALSE |
24 | METSIM | Adipose | EVI5 | 0.14 | 0.10 | enet | 35 | 0.11 | 1.0e-15 | 5.5 | 5.1 | 3.0e-07 | 0.61 | 0.95 | 0.05 | FALSE |
25 | ROSMAP | Brain Pre-frontal Cortex | FAM69A | 0.10 | 0.13 | lasso | 4 | 0.15 | 2.4e-19 | 5.9 | 6.5 | 7.9e-11 | 0.70 | 0.53 | 0.47 | FALSE |
26 | The Cancer Genome Atlas | Breast Invasive Carcinoma | EVI5 | 0.03 | 0.03 | lasso | 4 | 0.04 | 3.6e-09 | 5.3 | 6.3 | 3.4e-10 | 0.89 | 0.04 | 0.96 | FALSE |
27 | The Cancer Genome Atlas | Colon Adenocarcinoma | EVI5 | 0.07 | 0.04 | blup | 93 | 0.03 | 4.7e-03 | 4.7 | 6.1 | 8.3e-10 | 0.79 | 0.10 | 0.50 | FALSE |
28 | The Cancer Genome Atlas | Glioblastoma Multiforme | EVI5 | 0.14 | 0.04 | blup | 93 | 0.06 | 8.9e-03 | 5.9 | 6.9 | 5.4e-12 | 0.88 | 0.03 | 0.74 | FALSE |
29 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | EVI5 | 0.08 | 0.04 | blup | 96 | 0.06 | 8.6e-08 | 5.5 | 7.1 | 1.3e-12 | 0.88 | 0.03 | 0.97 | FALSE |
30 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | EVI5 | 0.07 | 0.05 | blup | 96 | 0.06 | 2.5e-07 | 5.3 | 5.6 | 2.3e-08 | 0.80 | 0.16 | 0.84 | FALSE |
31 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | EVI5 | 0.04 | 0.02 | blup | 96 | 0.04 | 1.4e-03 | 5.9 | 7.2 | 8.8e-13 | 0.85 | 0.03 | 0.66 | TRUE |
32 | The Cancer Genome Atlas | Brain Lower Grade Glioma | EVI5 | 0.18 | 0.16 | lasso | 7 | 0.15 | 2.0e-16 | 6.6 | 6.8 | 9.0e-12 | 0.98 | 0.01 | 0.99 | FALSE |
33 | The Cancer Genome Atlas | Lung Adenocarcinoma | EVI5 | 0.05 | 0.07 | lasso | 5 | 0.07 | 5.6e-09 | 5.3 | 6.1 | 8.4e-10 | 0.80 | 0.13 | 0.87 | FALSE |
34 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | EVI5 | 0.04 | 0.04 | blup | 93 | 0.03 | 4.8e-04 | 5.4 | 6.8 | 9.3e-12 | 0.85 | 0.10 | 0.87 | FALSE |
35 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | EVI5 | 0.05 | 0.02 | blup | 96 | 0.03 | 2.3e-03 | 4.7 | 6.8 | 9.2e-12 | 0.83 | 0.09 | 0.71 | FALSE |
36 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | EVI5 | 0.10 | 0.06 | blup | 94 | 0.08 | 2.9e-04 | 6.6 | 6.8 | 1.4e-11 | 0.92 | 0.02 | 0.96 | FALSE |
37 | The Cancer Genome Atlas | Prostate Adenocarcinoma | EVI5 | 0.06 | 0.10 | blup | 94 | 0.10 | 1.7e-10 | 6.6 | 7.1 | 1.3e-12 | 0.92 | 0.01 | 0.99 | FALSE |
38 | The Cancer Genome Atlas | Stomach Adenocarcinoma | EVI5 | 0.14 | 0.07 | lasso | 3 | 0.08 | 3.4e-06 | 5.3 | 5.3 | 9.4e-08 | 0.61 | 0.69 | 0.27 | FALSE |