TWAS
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Usage
Models
Genes
Traits
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Traits
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chr12:28,085,129-28,951,469
Best TWAS P=2.3e-07 · Best GWAS P=1.44e-05 conditioned to 0.758
28.1M
28.2M
28.3M
28.4M
28.5M
28.6M
28.7M
28.8M
28.9M
29M
0
1
2
3
4
5
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
2
The Cancer Genome Atlas
Lung Adenocarcinoma
CCDC91
0.09
0.01
blup
170
0.02
1.0e-03
3.7
5.2
2.3e-07
0.80
0.05
0.58
TRUE
1
The Cancer Genome Atlas
Head and Neck Squamous Cell Carcinoma
CCDC91
0.06
0.02
blup
174
0.04
2.9e-05
-3.9
5.1
2.8e-07
0.82
0.11
0.46
FALSE