Best TWAS P=6.83e-08 · Best GWAS P=5.82e-12 conditioned to 8.51e-13
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | FAM76B | 0.06 | 0.02 | lasso | 3 | 0.01 | 8.1e-03 | 5.3 | -5.4 | 7.4e-08 | 0.07 | 0.83 | 0.03 | FALSE |
2 | GTEx | Adipose Subcutaneous | CEP57 | 0.17 | 0.12 | enet | 26 | 0.14 | 3.1e-11 | 5.3 | 5.2 | 1.5e-07 | -0.05 | 0.98 | 0.02 | FALSE |
3 | GTEx | Brain Cerebellar Hemisphere | AP001877.1 | 0.29 | 0.24 | lasso | 7 | 0.25 | 5.0e-07 | 4.8 | 5.2 | 2.5e-07 | -0.03 | 0.88 | 0.02 | FALSE |
4 | GTEx | Brain Frontal Cortex BA9 | AP001877.1 | 0.20 | -0.01 | enet | 21 | 0.00 | 4.6e-01 | 5.3 | 5.4 | 7.3e-08 | -0.08 | 0.11 | 0.07 | FALSE |
5 | GTEx | Colon Transverse | CEP57 | 0.12 | 0.11 | lasso | 3 | 0.11 | 6.8e-06 | 5.3 | 5.3 | 1.4e-07 | -0.05 | 0.86 | 0.05 | FALSE |
6 | GTEx | Esophagus Mucosa | CEP57 | 0.14 | 0.14 | lasso | 3 | 0.10 | 6.0e-07 | 5.3 | 5.4 | 6.8e-08 | -0.05 | 0.97 | 0.03 | TRUE |
7 | GTEx | Esophagus Muscularis | CEP57 | 0.15 | 0.05 | enet | 21 | 0.06 | 9.0e-05 | 5.3 | 5.4 | 8.2e-08 | -0.06 | 0.95 | 0.02 | FALSE |
8 | GTEx | Esophagus Muscularis | AP001877.1 | 0.17 | 0.09 | lasso | 6 | 0.10 | 6.2e-07 | 5.3 | 5.3 | 1.0e-07 | -0.02 | 0.94 | 0.03 | FALSE |
9 | GTEx | Muscle Skeletal | CEP57 | 0.15 | 0.18 | lasso | 9 | 0.18 | 1.8e-17 | 5.2 | 5.1 | 2.9e-07 | -0.01 | 0.98 | 0.02 | FALSE |
10 | GTEx | Nerve Tibial | MTMR2 | 0.14 | 0.10 | enet | 16 | 0.08 | 2.0e-06 | 4.8 | -5.3 | 1.3e-07 | 0.05 | 0.98 | 0.02 | FALSE |
11 | GTEx | Nerve Tibial | CEP57 | 0.15 | 0.08 | lasso | 6 | 0.07 | 1.9e-05 | 5.3 | 5.3 | 9.1e-08 | -0.04 | 0.97 | 0.02 | FALSE |
12 | GTEx | Nerve Tibial | AP001877.1 | 0.15 | 0.05 | lasso | 3 | 0.05 | 1.6e-04 | 5.3 | 5.2 | 2.1e-07 | -0.03 | 0.93 | 0.02 | FALSE |
13 | GTEx | Pancreas | CEP57 | 0.19 | 0.10 | lasso | 13 | 0.08 | 3.6e-04 | 5.4 | 5.2 | 1.8e-07 | -0.06 | 0.85 | 0.03 | FALSE |
14 | GTEx | Skin Not Sun Exposed Suprapubic | CEP57 | 0.14 | 0.06 | enet | 10 | 0.05 | 9.6e-04 | 3.3 | 5.3 | 1.1e-07 | -0.09 | 0.95 | 0.02 | FALSE |
15 | GTEx | Skin Sun Exposed Lower leg | CEP57 | 0.19 | 0.14 | enet | 24 | 0.16 | 4.1e-13 | 5.3 | 5.2 | 2.2e-07 | -0.02 | 0.97 | 0.03 | FALSE |
16 | ROSMAP | Brain Pre-frontal Cortex | AP001877.1 | 0.17 | 0.27 | lasso | 12 | 0.27 | 3.6e-35 | 5.3 | 5.2 | 2.0e-07 | -0.03 | 0.98 | 0.02 | FALSE |
17 | YFS | Blood | FAM76B | 0.14 | 0.25 | lasso | 10 | 0.26 | 8.1e-83 | 5.1 | -5.2 | 1.7e-07 | 0.03 | 0.98 | 0.02 | FALSE |