TWAS
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Traits
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Traits
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Neuroticism
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chr9:97,520,168-98,975,128
Best TWAS P=2.74e-10 · Best GWAS P=3.78e-12 conditioned to 0.00371
97.6M
97.8M
98M
98.2M
98.4M
98.6M
98.8M
99M
0
2
4
6
8
10
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
1
GTEx
Liver
PTCH1
0.25
0.06
enet
11
0.03
4.9e-02
6.8
6.3
2.7e-10
0.91
0.01
0.94
TRUE
3
YFS
Blood
PTCH1
0.09
0.05
lasso
8
0.05
1.2e-15
6.3
6.1
1.1e-09
0.95
0.03
0.97
FALSE
4
The Cancer Genome Atlas
Kidney Renal Clear Cell Carcinoma
PTCH1
0.04
0.00
blup
56
0.02
1.6e-03
6.3
5.7
1.3e-08
0.72
0.02
0.35
FALSE
2
GTEx
Spleen
PTCH1
0.33
0.08
lasso
8
0.18
1.9e-05
-1.8
5.4
6.0e-08
0.64
0.04
0.79
FALSE