893 significantly associated models · 160 unique genes
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# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 1 | 7715776 | 9571422 | 1 | 1 | 1.2e-07 | 2.8e-07 | 3.5e-01 | 97 | RERE |
2 | 1 | 86635245 | 88077288 | 1 | 1 | 2.6e-07 | 9.6e-05 | 1.5e-04 | 5 | SEP15 |
3 | 1 | 171053153 | 172474017 | 1 | 1 | 7.6e-11 | 4.6e-09 | 6.7e-03 | 79 | METTL13 |
4 | 1 | 173103273 | 174525917 | 1 | 1 | 1.2e-07 | 2.9e-08 | 1.2e-02 | 79 | DARS2 |
5 | 1 | 201252866 | 202669883 | 1 | 1 | 1.4e-07 | 4.4e-07 | 2.5e-05 | 30 | RNPEP |
6 | 1 | 226385623 | 227873074 | 1 | 1 | 1.7e-07 | 8.6e-07 | 2.5e-02 | 79 | ADCK3 |
7 | 2 | 23453834 | 24924438 | 1 | 1 | 8.4e-08 | 1.5e-07 | 2.5e-02 | 82 | UBXN2A |
8 | 2 | 86061013 | 87557137 | 3 | 1 | 3.7e-09 | 2.9e-08 | 3.3e-02 | 85 | PLGLB1 |
9 | 2 | 147993969 | 149475737 | 2 | 2 | 1.7e-15 | 3.7e-17 | 8.8e-02 | 96 | ORC4 ORC4L |
10 | 2 | 172084299 | 173544743 | 1 | 1 | 9.1e-08 | 6.4e-07 | 5.4e-02 | 85 | HAT1 |
11 | 3 | 16154636 | 17814553 | 1 | 1 | 8.1e-10 | 1.2e-10 | 1.0e+00 | 100 | PLCL2 |
12 | 3 | 35439546 | 36079910 | 1 | 1 | 6.7e-11 | 3.3e-12 | 5.4e-03 | 84 | ARPP21 |
13 | 3 | 48702606 | 51043528 | 5 | 2 | 1.7e-09 | 4.1e-07 | 1.0e+00 | 100 | GPX1 U73166.2 |
14 | 3 | 51860817 | 53489090 | 2 | 1 | 6.9e-08 | 6.6e-08 | 1.0e+00 | 100 | NT5DC2 |
15 | 3 | 84767271 | 86367480 | 1 | 1 | 1.1e-07 | 5.6e-08 | 6.8e-02 | 89 | CADM2 |
16 | 3 | 135273949 | 137423165 | 6 | 1 | 1.4e-12 | 3.0e-12 | 1.0e+00 | 100 | STAG1 |
17 | 4 | 14777384 | 16291144 | 1 | 1 | 1.8e-07 | 1.3e-06 | 1.0e-02 | 72 | CC2D2A |
18 | 4 | 41416242 | 42851723 | 1 | 1 | 2.2e-07 | 1.6e-07 | 5.6e-02 | 87 | BEND4 |
19 | 4 | 89947254 | 91439574 | 1 | 1 | 7.1e-09 | 1.7e-09 | 1.0e+00 | 100 | SNCA |
20 | 5 | 86867897 | 88677293 | 4 | 3 | 2.9e-12 | 9.1e-11 | 7.3e-01 | 100 | LINC00461 LOC645323 TMEM161B |
21 | 7 | 1580921 | 2977732 | 1 | 1 | 6.9e-08 | 5.4e-09 | 6.1e-04 | 66 | FTSJ2 |
22 | 7 | 11553163 | 12967449 | 1 | 1 | 1.0e-07 | 7.4e-08 | 8.8e-02 | 90 | TMEM106B |
23 | 7 | 31804088 | 33193481 | 1 | 1 | 4.8e-08 | 3.0e-07 | 4.7e-02 | 85 | AC018641.7 |
24 | 7 | 125383444 | 127590914 | 1 | 1 | 2.2e-09 | 2.9e-12 | 7.7e-06 | 59 | GRM8 |
25 | 7 | 136676570 | 137272621 | 1 | 1 | 1.9e-07 | 7.6e-07 | 2.3e-02 | 79 | PTN |
26 | 7 | 154388677 | 155777228 | 1 | 1 | 1.7e-08 | 8.4e-09 | 1.0e+00 | 100 | AC144652.1 |
27 | 8 | 94046312 | 95443806 | 1 | 1 | 1.2e-08 | 2.9e-07 | 9.7e-01 | 100 | RP11-10N23.4 |
28 | 9 | 95502571 | 96898436 | 1 | 1 | 2.2e-08 | 3.4e-09 | 7.2e-06 | 42 | RP11-165J3.6 |
29 | 9 | 97520168 | 98975128 | 1 | 1 | 2.7e-10 | 3.8e-12 | 3.7e-03 | 82 | PTCH1 |
30 | 9 | 119768572 | 121177842 | 1 | 1 | 1.9e-10 | 9.6e-12 | 5.8e-04 | 74 | TLR4 |
31 | 9 | 126771321 | 128824378 | 5 | 2 | 1.2e-08 | 2.8e-08 | 1.0e+00 | 100 | NEK6 PPP6C |
32 | 9 | 136197834 | 137631198 | 1 | 1 | 6.9e-08 | 7.7e-06 | 5.5e-06 | -3 | BRD3 |
33 | 10 | 103905779 | 105647095 | 4 | 1 | 1.2e-08 | 6.7e-09 | 1.0e+00 | 100 | CNNM2 |
34 | 11 | 9105636 | 11013472 | 1 | 1 | 2.7e-07 | 2.7e-07 | 1.5e-02 | 78 | SBF2 |
35 | 11 | 12611333 | 14105497 | 1 | 1 | 3.9e-13 | 1.5e-12 | 1.2e-01 | 95 | ARNTL |
36 | 11 | 31573646 | 32085420 | 1 | 1 | 1.8e-10 | 7.4e-13 | 1.4e-05 | 63 | PAX6 |
37 | 11 | 46010847 | 48559571 | 14 | 7 | 2.6e-13 | 6.7e-11 | NaN | NaN | ARHGAP1 C1QTNF4 LRP4 MADD MTCH2 NUP160 |
38 | 11 | 56666189 | 58178587 | 4 | 1 | 4.0e-12 | 6.1e-12 | 1.0e+00 | 100 | ZDHHC5 |
39 | 11 | 77215675 | 78828001 | 2 | 1 | 4.4e-09 | 3.8e-08 | 7.5e-02 | 90 | GAB2 |
40 | 11 | 112135760 | 113969669 | 5 | 6 | 2.3e-18 | 2.5e-19 | NaN | NaN | ANKK1 DRD2 NCAM1 TTC12 |
41 | 11 | 133079948 | 134525648 | 1 | 1 | 7.2e-09 | 3.8e-10 | 1.3e-02 | 84 | IGSF9B |
42 | 12 | 108763672 | 110729807 | 5 | 1 | 1.6e-12 | 1.9e-12 | 1.2e-01 | 95 | KCTD10 |
43 | 12 | 118116461 | 119551378 | 2 | 1 | 7.8e-12 | 1.8e-11 | 2.3e-01 | 97 | TAOK3 |
44 | 12 | 120636549 | 121146219 | 1 | 1 | 1.2e-07 | 1.0e-05 | 2.3e-01 | 93 | GATC |
45 | 13 | 66643767 | 68053176 | 1 | 1 | 1.9e-08 | 2.1e-08 | 2.3e-06 | 29 | PCDH9 |
46 | 13 | 98409084 | 99925872 | 1 | 1 | 5.3e-08 | 1.8e-08 | 1.3e-02 | 80 | STK24 |
47 | 14 | 69027866 | 70518587 | 2 | 1 | 5.8e-09 | 1.0e-09 | 4.9e-02 | 90 | DCAF5 |
48 | 14 | 74245607 | 76226003 | 7 | 1 | 7.5e-16 | 1.2e-14 | 9.6e-03 | 89 | RPS6KL1 |
49 | 15 | 67138238 | 68789191 | 2 | 1 | 1.8e-08 | 7.1e-09 | 1.0e+00 | 100 | MAP2K5 |
50 | 15 | 77207277 | 78806023 | 1 | 1 | 3.1e-07 | 7.1e-09 | 2.5e-04 | 60 | LINGO1 |
51 | 16 | 30347731 | 31833122 | 8 | 1 | 1.1e-09 | 3.5e-09 | 2.4e-01 | 96 | STX1B |
52 | 16 | 86667409 | 89448663 | 4 | 3 | 2.4e-08 | 9.4e-10 | 1.3e-04 | 61 | MAP1LC3B MVD SNAI3-AS1 |
53 | 17 | 1805677 | 3287175 | 1 | 1 | 1.4e-07 | 5.5e-11 | 6.0e-06 | 52 | PAFAH1B1 |
54 | 17 | 7846684 | 8340866 | 1 | 1 | 2.8e-07 | 5.3e-07 | 1.3e-01 | 91 | C17orf59 |
55 | 17 | 37931220 | 38453334 | 1 | 1 | 8.2e-08 | 3.0e-08 | 6.3e-02 | 89 | MED24 |
56 | 17 | 42607368 | 45796313 | 21 | 1 | 5.8e-28 | 1.4e-26 | 5.0e-02 | 97 | WNT3 |
57 | 17 | 78843139 | 79380547 | 1 | 1 | 1.6e-10 | 2.4e-12 | 3.2e-03 | 82 | AATK |
58 | 18 | 30921425 | 31568499 | 1 | 1 | 5.6e-11 | 3.1e-10 | 1.5e-01 | 95 | ASXL3 |
59 | 18 | 34124783 | 35844220 | 1 | 2 | 3.7e-09 | 1.2e-18 | 6.7e-07 | 68 | CELF4 |
60 | 18 | 52209411 | 54028036 | 1 | 1 | 5.4e-12 | 1.1e-14 | 5.8e-07 | 58 | TCF4 |
61 | 19 | 45799442 | 47218599 | 1 | 1 | 3.0e-08 | 2.5e-08 | 1.6e-01 | 94 | CCDC61 |
62 | 20 | 17776692 | 19441650 | 4 | 1 | 3.5e-08 | 6.2e-08 | 4.0e-01 | 98 | DTD1 |
63 | 20 | 32594714 | 34109427 | 1 | 1 | 1.4e-07 | 1.3e-06 | 6.7e-01 | 99 | NCOA6 |
64 | 20 | 43958786 | 45456440 | 2 | 1 | 6.5e-11 | 1.3e-09 | 5.3e-03 | 79 | CD40 |
65 | 22 | 40472399 | 42614362 | 4 | 1 | 6.8e-10 | 1.1e-10 | 5.4e-02 | 91 | RANGAP1 |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
GTEx | Uterus | 9 | 1.59 | 3.3 |
GTEx | Brain Hippocampus | 6 | 1.14 | 3.2 |
GTEx | Ovary | 12 | 1.32 | 3.1 |
GTEx | Artery Coronary | 14 | 1.18 | 3.0 |
GTEx | Brain Cortex | 13 | 1.26 | 3.0 |
GTEx | Small Intestine Terminal Ileum | 5 | 1.08 | 3.0 |
GTEx | Brain Nucleus accumbens basal ganglia | 8 | 0.92 | 2.9 |
GTEx | Brain Putamen basal ganglia | 6 | 0.96 | 2.9 |
GTEx | Cells EBV-transformed lymphocytes | 12 | 0.84 | 2.9 |
GTEx | Esophagus Gastroesophageal Junction | 15 | 1.04 | 2.9 |
GTEx | Vagina | 5 | 0.79 | 2.9 |
GTEx | Brain Caudate basal ganglia | 10 | 1.09 | 2.8 |
GTEx | Brain Frontal Cortex BA9 | 8 | 0.86 | 2.8 |
GTEx | Brain Hypothalamus | 5 | 0.85 | 2.8 |
GTEx | Liver | 7 | 0.98 | 2.8 |
GTEx | Prostate | 10 | 1.20 | 2.8 |
GTEx | Spleen | 13 | 0.92 | 2.8 |
The Cancer Genome Atlas | Esophageal Carcinoma | 6 | 0.87 | 2.8 |
GTEx | Esophagus Muscularis | 20 | 0.62 | 2.7 |
GTEx | Heart Atrial Appendage | 15 | 0.95 | 2.7 |
GTEx | Heart Left Ventricle | 12 | 0.78 | 2.7 |
GTEx | Skin Not Sun Exposed Suprapubic | 20 | 0.81 | 2.7 |
GTEx | Stomach | 12 | 0.82 | 2.7 |
GTEx | Adipose Visceral Omentum | 12 | 0.59 | 2.6 |
GTEx | Brain Cerebellar Hemisphere | 10 | 0.67 | 2.6 |
GTEx | Breast Mammary Tissue | 18 | 0.91 | 2.6 |
GTEx | Breast Mammary Tissue (Male) | 10 | 0.84 | 2.6 |
GTEx | Breast Mammary Tissue (Female) | 17 | 1.03 | 2.6 |
GTEx | Colon Sigmoid | 11 | 0.75 | 2.6 |
GTEx | Colon Transverse | 19 | 0.92 | 2.6 |
GTEx | Pancreas | 13 | 0.80 | 2.6 |
GTEx | Pituitary | 11 | 0.99 | 2.6 |
GTEx | Skin Sun Exposed Lower leg | 24 | 0.66 | 2.6 |
GTEx | Testis | 26 | 0.82 | 2.6 |
GTEx | Adrenal Gland | 11 | 0.75 | 2.5 |
GTEx | Artery Aorta | 16 | 0.54 | 2.5 |
GTEx | Brain Cerebellum | 12 | 0.61 | 2.5 |
GTEx | Lung | 15 | 0.52 | 2.5 |
GTEx | Muscle Skeletal | 17 | 0.59 | 2.5 |
GTEx | Whole Blood | 13 | 0.65 | 2.5 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 6 | 0.59 | 2.5 |
GTEx | Artery Tibial | 18 | 0.48 | 2.4 |
GTEx | Cells Transformed fibroblasts | 18 | 0.43 | 2.4 |
GTEx | Esophagus Mucosa | 20 | 0.60 | 2.4 |
GTEx | Thyroid | 20 | 0.50 | 2.4 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 6 | 0.56 | 2.4 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 9 | 0.53 | 2.4 |
GTEx | Adipose Subcutaneous | 16 | 0.46 | 2.3 |
GTEx | Nerve Tibial | 21 | 0.49 | 2.3 |
NTR | Blood | 9 | 0.37 | 2.3 |
ROSMAP | Brain Pre-frontal Cortex | 17 | 0.39 | 2.3 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 8 | 0.48 | 2.3 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 6 | 0.54 | 2.3 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 5 | 0.24 | 2.3 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 15 | 0.55 | 2.3 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 13 | 0.63 | 2.3 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 12 | 0.48 | 2.3 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 11 | 0.69 | 2.3 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 5 | 0.30 | 2.3 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 6 | 0.45 | 2.3 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 2 | 0.39 | 2.3 |
METSIM | Adipose | 14 | 0.30 | 2.2 |
CommonMind | Brain Pre-frontal Cortex | 12 | 0.22 | 2.2 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 16 | 0.39 | 2.2 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 5 | 0.45 | 2.2 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 17 | 0.58 | 2.2 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 19 | 0.41 | 2.2 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 2 | 0.29 | 2.2 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 4 | 0.31 | 2.2 |
The Cancer Genome Atlas | Thyroid Carcinoma | 23 | 0.45 | 2.2 |
YFS | Blood | 12 | 0.26 | 2.1 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 15 | 0.34 | 2.1 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 12 | 0.28 | 2.1 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 1 | 0.19 | 2.0 |