TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Smoking Status
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chr22:45,736,153-47,135,205
Best TWAS P=1.59e-08 · Best GWAS P=3.28e-08 conditioned to 0.0851
45.8M
46M
46.2M
46.4M
46.6M
46.8M
47M
47.2M
0
2
4
6
8
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
2
GTEx
Artery Tibial
LINC00899
0.30
0.08
enet
18
0.18
5.1e-14
-3.5
-5.7
1.6e-08
0.79
0.04
0.96
TRUE
3
GTEx
Cells Transformed fibroblasts
LINC00899
0.18
0.01
enet
13
0.06
4.9e-05
-4.5
-5.4
6.2e-08
0.77
0.03
0.96
FALSE
4
The Cancer Genome Atlas
Thyroid Carcinoma
LOC100271722
0.05
0.04
enet
8
0.09
7.5e-09
-5.1
-5.4
8.5e-08
0.85
0.01
0.99
FALSE
1
GTEx
Adipose Subcutaneous
LINC00899
0.17
0.04
lasso
5
0.06
1.1e-05
-5.5
-5.1
2.7e-07
0.87
0.00
0.99
FALSE