742 significantly associated models · 197 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 1 | 7715776 | 9571422 | 2 | 1 | 3.5e-10 | 1.4e-08 | 9.2e-01 | 100 | RERE |
2 | 1 | 31494475 | 32929175 | 1 | 1 | 4.9e-08 | 1.8e-08 | 1.0e+00 | 100 | BAI2 |
3 | 1 | 33030461 | 34592020 | 2 | 1 | 3.8e-09 | 2.9e-09 | 1.0e+00 | 100 | PHC2 |
4 | 1 | 43152610 | 45109101 | 3 | 1 | 8.2e-10 | 1.4e-13 | 3.2e-06 | 60 | ST3GAL3 |
5 | 1 | 48301764 | 51180660 | 1 | 1 | 2.6e-08 | 1.9e-11 | 4.9e-05 | 63 | AGBL4 |
6 | 1 | 66019891 | 67086881 | 1 | 1 | 6.2e-11 | 4.5e-11 | 2.2e-02 | 88 | PDE4B |
7 | 1 | 153496711 | 154944156 | 2 | 1 | 7.2e-12 | 1.3e-11 | 5.6e-03 | 83 | HAX1 |
8 | 2 | 43417083 | 45864710 | 2 | 2 | 5.1e-19 | 8.5e-19 | 1.0e+00 | 100 | LRPPRC RP11-89K21.1 |
9 | 2 | 47224927 | 48727280 | 1 | 1 | 2.2e-07 | 4.3e-06 | 8.5e-01 | 100 | MSH6 |
10 | 2 | 161297929 | 162790882 | 1 | 1 | 3.1e-09 | 7.0e-09 | 4.9e-03 | 76 | TANK |
11 | 2 | 200553557 | 201060216 | 1 | 1 | 1.6e-07 | 1.3e-07 | 1.0e+00 | 100 | C2orf60 |
12 | 3 | 24941038 | 26396178 | 1 | 1 | 1.8e-08 | 1.4e-08 | 1.0e-08 | -2 | TOP2B |
13 | 3 | 48012797 | 51043528 | 26 | 2 | 1.9e-11 | 2.8e-09 | 5.5e-02 | 90 | HYAL3 RHOA |
14 | 3 | 51616334 | 53778875 | 12 | 1 | 1.2e-08 | 3.3e-09 | 1.0e+00 | 100 | PPM1M |
15 | 3 | 84317575 | 86808226 | 1 | 1 | 4.4e-20 | 4.7e-18 | 7.5e-01 | 100 | CADM2 |
16 | 5 | 59353199 | 61145102 | 3 | 1 | 1.5e-09 | 9.3e-10 | 4.7e-02 | 90 | ELOVL7 |
17 | 5 | 86867897 | 88427942 | 1 | 1 | 6.1e-08 | 1.7e-09 | 7.9e-03 | 81 | TMEM161B-AS1 |
18 | 5 | 169590807 | 171533656 | 2 | 1 | 3.6e-08 | 9.7e-09 | 1.0e+00 | 100 | NPM1 |
19 | 6 | 36751245 | 38162310 | 2 | 1 | 3.6e-08 | 4.4e-09 | 7.2e-03 | 79 | C6orf129 |
20 | 6 | 110588546 | 112621834 | 5 | 1 | 1.9e-19 | 2.1e-20 | 8.0e-03 | 92 | GTF3C6 |
21 | 7 | 1181139 | 2580275 | 2 | 2 | 2.6e-09 | 5.2e-10 | 2.8e-01 | 97 | AC110781.3 KIAA1908 |
22 | 7 | 2646223 | 5003373 | 1 | 1 | 8.2e-09 | 1.6e-11 | 3.8e-06 | 53 | SDK1 |
23 | 7 | 96405380 | 96896364 | 1 | 1 | 3.0e-08 | 5.9e-12 | 6.9e-06 | 57 | DLX5 |
24 | 7 | 98244565 | 99751521 | 3 | 1 | 1.7e-09 | 6.2e-09 | 4.2e-01 | 98 | CPSF4 |
25 | 7 | 109603832 | 111895681 | 1 | 1 | 2.2e-07 | 1.6e-07 | 1.0e+00 | 100 | IMMP2L |
26 | 7 | 116660803 | 118518479 | 2 | 2 | 7.9e-14 | 5.0e-14 | 1.0e+00 | 100 | CTTNBP2 NAA38 |
27 | 8 | 26648746 | 28100234 | 2 | 2 | 6.0e-20 | 9.9e-24 | 1.9e-04 | 86 | CLU EPHX2 |
28 | 8 | 65812899 | 67199420 | 1 | 1 | 1.9e-07 | 4.4e-07 | 3.3e-02 | 82 | CTD-3025N20.3 |
29 | 8 | 91282507 | 92689456 | 1 | 1 | 3.3e-08 | 1.9e-10 | 9.9e-04 | 73 | RP11-122A3.2 |
30 | 9 | 126927285 | 129422783 | 9 | 6 | 6.1e-15 | 1.1e-13 | NaN | NaN | ARPC5L GAPVD1 MAPKAP1 PPP6C |
31 | 10 | 10349662 | 12076043 | 1 | 1 | 2.7e-09 | 2.8e-07 | 5.8e-02 | 86 | CELF2 |
32 | 10 | 21087485 | 22724472 | 2 | 1 | 3.8e-08 | 4.3e-08 | 2.4e-01 | 95 | CASC10 |
33 | 10 | 102864652 | 105910221 | 20 | 9 | 1.1e-22 | 1.3e-22 | NaN | NaN | ACTR1A AS3MT BTRC C10orf32 NT5C2 RP11-18I14.10 WBP1L |
34 | 11 | 16343081 | 18106069 | 3 | 1 | 1.3e-09 | 3.1e-10 | 7.8e-03 | 82 | PIK3C2A |
35 | 11 | 26818083 | 28416646 | 2 | 2 | 1.8e-07 | 2.0e-15 | 8.4e-10 | 40 | BDNF-AS LIN7C |
36 | 11 | 63417724 | 65186348 | 2 | 2 | 1.6e-07 | 6.0e-07 | 3.7e-01 | 97 | CCDC88B NRXN2 |
37 | 11 | 112135760 | 113846006 | 2 | 1 | 6.7e-14 | 3.6e-43 | 7.9e-32 | 27 | NCAM1 |
38 | 11 | 133540722 | 134074099 | 1 | 1 | 7.9e-08 | 8.3e-08 | 1.0e+00 | 100 | IGSF9B |
39 | 12 | 55444736 | 57125879 | 5 | 1 | 6.8e-09 | 6.8e-08 | 8.8e-02 | 90 | SUOX |
40 | 12 | 108342014 | 109820777 | 1 | 1 | 1.1e-07 | 2.4e-07 | 1.8e-01 | 93 | CORO1C |
41 | 12 | 119870094 | 122037099 | 7 | 3 | 7.7e-10 | 3.1e-09 | 7.4e-01 | 100 | C12orf43 COQ5 UNC119B |
42 | 14 | 103289637 | 105211221 | 5 | 7 | 1.2e-09 | 2.5e-09 | NaN | NaN | KLC1 PPP1R13B TDRD9 XRCC3 |
43 | 15 | 46780520 | 48764942 | 1 | 1 | 8.1e-13 | 3.8e-17 | 1.4e-09 | 48 | SEMA6D |
44 | 15 | 67138238 | 68789191 | 1 | 1 | 1.7e-07 | 3.4e-07 | 1.0e-02 | 74 | MAP2K5 |
45 | 15 | 90730363 | 92135418 | 1 | 1 | 2.3e-07 | 7.1e-06 | 3.2e-01 | 95 | FES |
46 | 16 | 86671 | 1488646 | 13 | 1 | 1.5e-11 | 2.7e-11 | 1.8e-01 | 96 | WDR24 |
47 | 16 | 30347731 | 31720486 | 1 | 1 | 4.5e-08 | 2.1e-07 | 6.9e-05 | 41 | STX1B |
48 | 16 | 69062879 | 70725815 | 5 | 2 | 1.4e-10 | 4.8e-11 | 2.0e-01 | 96 | NOB1 PDXDC2P |
49 | 16 | 89339571 | 89871168 | 1 | 1 | 1.4e-07 | 6.9e-07 | 8.3e-02 | 88 | SPG7 |
50 | 17 | 1263564 | 2923933 | 2 | 1 | 1.1e-10 | 1.3e-09 | 3.9e-02 | 88 | SRR |
51 | 17 | 7577407 | 8066783 | 1 | 1 | 8.4e-08 | 2.3e-08 | 4.0e-02 | 86 | KCNAB3 |
52 | 17 | 37137299 | 38547868 | 2 | 1 | 8.4e-08 | 8.2e-08 | 4.7e-02 | 86 | PGAP3 |
53 | 17 | 44788310 | 45088455 | 1 | 1 | 3.0e-07 | 1.0e-04 | 2.8e-01 | 92 | LRRC37A2 |
54 | 18 | 69836 | 907710 | 1 | 1 | 5.7e-08 | 9.5e-09 | 3.5e-02 | 87 | USP14 |
55 | 20 | 30591354 | 32029439 | 1 | 1 | 1.7e-08 | 1.2e-10 | 7.2e-05 | 62 | COMMD7 |
56 | 20 | 61576647 | 62912463 | 2 | 1 | 8.6e-08 | 9.5e-06 | 1.0e-01 | 86 | RTEL1 |
57 | 21 | 46440385 | 46956571 | 1 | 1 | 1.7e-07 | 3.1e-07 | 3.0e-01 | 96 | POFUT2 |
58 | 22 | 41181586 | 43674249 | 11 | 3 | 5.1e-11 | 4.0e-10 | 2.9e-03 | 77 | CYP2D8P1 DESI1 RRP7B |
59 | 22 | 45736153 | 47135205 | 2 | 1 | 1.6e-08 | 3.3e-08 | 8.5e-02 | 90 | LINC00899 |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
GTEx | Brain Cortex | 4 | 0.39 | 2.8 |
GTEx | Liver | 5 | 0.70 | 2.8 |
GTEx | Brain Frontal Cortex BA9 | 4 | 0.43 | 2.7 |
GTEx | Brain Hippocampus | 3 | 0.57 | 2.7 |
GTEx | Brain Hypothalamus | 4 | 0.68 | 2.7 |
GTEx | Uterus | 8 | 1.41 | 2.7 |
GTEx | Brain Cerebellar Hemisphere | 7 | 0.47 | 2.6 |
GTEx | Brain Cerebellum | 11 | 0.55 | 2.6 |
GTEx | Brain Nucleus accumbens basal ganglia | 5 | 0.58 | 2.6 |
GTEx | Cells EBV-transformed lymphocytes | 11 | 0.77 | 2.6 |
GTEx | Heart Left Ventricle | 9 | 0.59 | 2.6 |
GTEx | Muscle Skeletal | 18 | 0.62 | 2.6 |
GTEx | Ovary | 9 | 0.99 | 2.6 |
GTEx | Pituitary | 5 | 0.45 | 2.6 |
GTEx | Prostate | 5 | 0.60 | 2.6 |
GTEx | Small Intestine Terminal Ileum | 1 | 0.22 | 2.6 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 9 | 0.88 | 2.6 |
GTEx | Adipose Subcutaneous | 27 | 0.77 | 2.5 |
GTEx | Adipose Visceral Omentum | 12 | 0.59 | 2.5 |
GTEx | Artery Coronary | 8 | 0.68 | 2.5 |
GTEx | Brain Caudate basal ganglia | 4 | 0.43 | 2.5 |
GTEx | Breast Mammary Tissue | 13 | 0.66 | 2.5 |
GTEx | Cells Transformed fibroblasts | 23 | 0.55 | 2.5 |
GTEx | Esophagus Muscularis | 12 | 0.37 | 2.5 |
GTEx | Heart Atrial Appendage | 9 | 0.57 | 2.5 |
GTEx | Lung | 14 | 0.49 | 2.5 |
GTEx | Pancreas | 8 | 0.49 | 2.5 |
GTEx | Skin Not Sun Exposed Suprapubic | 13 | 0.53 | 2.5 |
GTEx | Skin Sun Exposed Lower leg | 22 | 0.60 | 2.5 |
GTEx | Spleen | 5 | 0.35 | 2.5 |
GTEx | Stomach | 8 | 0.55 | 2.5 |
GTEx | Thyroid | 19 | 0.48 | 2.5 |
GTEx | Whole Blood | 12 | 0.60 | 2.5 |
The Cancer Genome Atlas | Esophageal Carcinoma | 2 | 0.29 | 2.5 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 7 | 0.44 | 2.5 |
GTEx | Adrenal Gland | 4 | 0.27 | 2.4 |
GTEx | Artery Aorta | 17 | 0.57 | 2.4 |
GTEx | Artery Tibial | 23 | 0.61 | 2.4 |
GTEx | Brain Putamen basal ganglia | 4 | 0.64 | 2.4 |
GTEx | Breast Mammary Tissue (Female) | 11 | 0.67 | 2.4 |
GTEx | Colon Sigmoid | 9 | 0.62 | 2.4 |
GTEx | Colon Transverse | 8 | 0.39 | 2.4 |
GTEx | Esophagus Gastroesophageal Junction | 10 | 0.69 | 2.4 |
GTEx | Esophagus Mucosa | 13 | 0.39 | 2.4 |
GTEx | Nerve Tibial | 20 | 0.46 | 2.4 |
GTEx | Testis | 11 | 0.35 | 2.4 |
METSIM | Adipose | 23 | 0.50 | 2.4 |
ROSMAP | Brain Pre-frontal Cortex | 17 | 0.39 | 2.4 |
CommonMind | Brain Pre-frontal Cortex | 20 | 0.37 | 2.4 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 6 | 0.54 | 2.4 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 7 | 0.63 | 2.4 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 7 | 0.53 | 2.4 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 6 | 0.56 | 2.4 |
GTEx | Breast Mammary Tissue (Male) | 4 | 0.34 | 2.3 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 19 | 0.43 | 2.3 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 13 | 0.63 | 2.3 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 11 | 0.40 | 2.3 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 14 | 0.34 | 2.3 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 9 | 0.44 | 2.3 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 11 | 0.26 | 2.3 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 13 | 0.44 | 2.3 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 10 | 0.40 | 2.3 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 4 | 0.57 | 2.3 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 2 | 0.37 | 2.3 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 3 | 0.18 | 2.3 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 2 | 0.16 | 2.3 |
The Cancer Genome Atlas | Thyroid Carcinoma | 17 | 0.33 | 2.3 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 1 | 0.20 | 2.3 |
GTEx | Vagina | 2 | 0.31 | 2.2 |
NTR | Blood | 13 | 0.54 | 2.2 |
YFS | Blood | 13 | 0.28 | 2.2 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 5 | 0.30 | 2.2 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 6 | 0.36 | 2.2 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 18 | 0.39 | 2.2 |