Best TWAS P=8.89e-13 · Best GWAS P=7.07e-13 conditioned to 0.0123
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | NDUFS1 | 0.10 | 0.09 | lasso | 9 | 0.09 | 1.2e-10 | 6.7 | -6.6 | 3.4e-11 | -0.93 | 0.02 | 0.98 | FALSE |
2 | GTEx | Adipose Subcutaneous | NDUFS1 | 0.08 | 0.05 | lasso | 5 | 0.01 | 2.0e-02 | 6.6 | -6.6 | 3.2e-11 | -0.95 | 0.03 | 0.96 | FALSE |
3 | GTEx | Adipose Subcutaneous | AC007383.4 | 0.08 | 0.05 | lasso | 4 | 0.04 | 2.8e-04 | 6.3 | -6.2 | 5.2e-10 | -0.89 | 0.02 | 0.97 | FALSE |
4 | GTEx | Adipose Visceral Omentum | AC007383.4 | 0.10 | 0.01 | lasso | 4 | 0.02 | 4.8e-02 | 5.4 | -6.2 | 6.0e-10 | -0.77 | 0.03 | 0.74 | FALSE |
5 | GTEx | Artery Aorta | NDUFS1 | 0.11 | 0.07 | enet | 29 | 0.01 | 6.7e-02 | 6.8 | -6.0 | 2.0e-09 | -0.83 | 0.02 | 0.96 | FALSE |
6 | GTEx | Artery Tibial | NDUFS1 | 0.16 | 0.15 | enet | 14 | 0.15 | 3.9e-12 | 6.8 | -6.9 | 4.9e-12 | -0.98 | 0.02 | 0.98 | FALSE |
7 | GTEx | Brain Cerebellum | NDUFS1 | 0.13 | 0.15 | lasso | 2 | 0.10 | 5.3e-04 | 6.3 | -6.3 | 2.8e-10 | -0.90 | 0.04 | 0.87 | FALSE |
8 | GTEx | Brain Cerebellum | AC007383.4 | 0.23 | 0.05 | lasso | 3 | 0.18 | 3.9e-06 | 5.5 | -5.7 | 1.1e-08 | -0.77 | 0.04 | 0.85 | FALSE |
9 | GTEx | Brain Frontal Cortex BA9 | NDUFS1 | 0.36 | 0.33 | lasso | 3 | 0.32 | 3.9e-09 | 6.3 | -6.2 | 4.3e-10 | -0.90 | 0.03 | 0.97 | FALSE |
10 | GTEx | Brain Frontal Cortex BA9 | AC007383.4 | 0.39 | 0.36 | lasso | 3 | 0.35 | 3.3e-10 | 6.4 | -6.5 | 8.6e-11 | -0.94 | 0.03 | 0.97 | FALSE |
11 | GTEx | Brain Putamen basal ganglia | NDUFS1 | 0.16 | 0.06 | enet | 6 | 0.05 | 2.9e-02 | 6.2 | -6.4 | 2.0e-10 | -0.84 | 0.03 | 0.76 | FALSE |
12 | GTEx | Cells Transformed fibroblasts | NDUFS1 | 0.33 | 0.42 | enet | 28 | 0.40 | 3.2e-32 | 6.8 | -6.7 | 2.4e-11 | -0.96 | 0.03 | 0.97 | FALSE |
13 | GTEx | Cells Transformed fibroblasts | AC007383.4 | 0.18 | 0.15 | enet | 28 | 0.17 | 4.5e-13 | 6.8 | -6.9 | 5.8e-12 | -0.91 | 0.03 | 0.97 | FALSE |
14 | GTEx | Colon Sigmoid | AC007383.4 | 0.15 | 0.14 | enet | 13 | 0.09 | 3.8e-04 | 6.8 | -7.1 | 1.7e-12 | -0.92 | 0.03 | 0.96 | FALSE |
15 | GTEx | Colon Transverse | AC007383.4 | 0.14 | 0.09 | lasso | 2 | 0.06 | 8.8e-04 | 6.6 | -6.5 | 7.0e-11 | -0.90 | 0.02 | 0.92 | FALSE |
16 | GTEx | Esophagus Gastroesophageal Junction | NDUFS1 | 0.16 | 0.09 | enet | 22 | 0.03 | 2.4e-02 | 6.8 | -6.9 | 5.8e-12 | -0.85 | 0.03 | 0.94 | FALSE |
17 | GTEx | Esophagus Gastroesophageal Junction | AC007383.4 | 0.21 | 0.17 | enet | 11 | 0.14 | 8.5e-06 | 6.8 | -6.8 | 8.4e-12 | -0.96 | 0.02 | 0.97 | FALSE |
18 | GTEx | Esophagus Mucosa | NDUFS1 | 0.09 | 0.05 | lasso | 2 | 0.02 | 8.6e-03 | 7.2 | -7.1 | 1.4e-12 | -0.97 | 0.01 | 0.98 | FALSE |
19 | GTEx | Esophagus Mucosa | AC007383.4 | 0.16 | 0.08 | enet | 26 | 0.10 | 5.8e-07 | 6.8 | -7.1 | 1.1e-12 | -0.79 | 0.02 | 0.98 | FALSE |
20 | GTEx | Esophagus Muscularis | NDUFS1 | 0.17 | 0.19 | enet | 21 | 0.18 | 5.1e-11 | 6.8 | -7.0 | 2.4e-12 | -0.93 | 0.03 | 0.97 | FALSE |
21 | GTEx | Esophagus Muscularis | AC007383.4 | 0.10 | 0.13 | enet | 4 | 0.10 | 1.3e-06 | 6.8 | -6.8 | 1.1e-11 | -0.96 | 0.02 | 0.98 | FALSE |
22 | GTEx | Heart Atrial Appendage | AC007383.4 | 0.12 | 0.10 | enet | 21 | 0.09 | 9.8e-05 | 6.8 | -6.7 | 2.9e-11 | -0.90 | 0.03 | 0.97 | FALSE |
23 | GTEx | Heart Left Ventricle | AC007383.4 | 0.17 | 0.13 | enet | 19 | 0.16 | 9.7e-09 | 6.7 | -6.3 | 3.4e-10 | -0.90 | 0.03 | 0.97 | FALSE |
24 | GTEx | Liver | AC007383.4 | 0.27 | 0.10 | lasso | 4 | 0.03 | 4.4e-02 | 6.2 | -6.0 | 1.5e-09 | -0.88 | 0.04 | 0.66 | FALSE |
25 | GTEx | Muscle Skeletal | NDUFS1 | 0.20 | 0.14 | enet | 20 | 0.12 | 4.0e-12 | 6.7 | -6.7 | 2.4e-11 | -0.95 | 0.04 | 0.96 | FALSE |
26 | GTEx | Muscle Skeletal | AC007383.4 | 0.23 | 0.18 | enet | 38 | 0.20 | 2.1e-19 | 6.7 | -5.8 | 5.9e-09 | -0.86 | 0.04 | 0.96 | FALSE |
27 | GTEx | Nerve Tibial | NDUFS1 | 0.13 | 0.08 | enet | 14 | 0.05 | 3.1e-04 | 6.3 | -6.7 | 1.8e-11 | -0.91 | 0.04 | 0.96 | FALSE |
28 | GTEx | Nerve Tibial | AC007383.4 | 0.14 | 0.06 | lasso | 6 | 0.05 | 3.0e-04 | 6.8 | -6.7 | 2.9e-11 | -0.94 | 0.03 | 0.97 | FALSE |
29 | GTEx | Pituitary | AC007383.4 | 0.31 | 0.05 | enet | 15 | 0.04 | 3.9e-02 | 6.1 | -6.7 | 2.2e-11 | -0.88 | 0.04 | 0.75 | FALSE |
30 | GTEx | Skin Sun Exposed Lower leg | AC007383.4 | 0.12 | 0.07 | enet | 21 | 0.07 | 3.9e-06 | 6.7 | -5.2 | 1.9e-07 | -0.79 | 0.03 | 0.97 | FALSE |
31 | GTEx | Testis | NDUFS1 | 0.15 | 0.08 | lasso | 6 | 0.08 | 2.1e-04 | 4.8 | -6.3 | 3.6e-10 | -0.65 | 0.08 | 0.83 | FALSE |
32 | GTEx | Thyroid | NDUFS1 | 0.21 | 0.10 | enet | 39 | 0.05 | 7.4e-05 | 6.8 | -7.2 | 8.9e-13 | -0.79 | 0.02 | 0.98 | TRUE |
33 | GTEx | Whole Blood | AC007383.4 | 0.07 | 0.03 | enet | 11 | 0.03 | 6.0e-04 | 5.4 | -5.8 | 7.1e-09 | -0.67 | 0.09 | 0.85 | FALSE |
34 | METSIM | Adipose | NDUFS1 | 0.12 | 0.18 | lasso | 4 | 0.17 | 5.2e-25 | 6.8 | -6.8 | 7.5e-12 | -0.97 | 0.02 | 0.98 | FALSE |
35 | METSIM | Adipose | ZDBF2 | 0.03 | 0.00 | bslmm | 436 | 0.00 | 1.1e-01 | -5.4 | 6.1 | 1.1e-09 | 0.65 | 0.27 | 0.53 | FALSE |
36 | ROSMAP | Brain Pre-frontal Cortex | INO80D | 0.22 | 0.34 | lasso | 2 | 0.35 | 2.0e-47 | 4.9 | 5.9 | 3.3e-09 | 0.83 | 1.00 | 0.00 | FALSE |
37 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | NDUFS1 | 0.05 | 0.05 | enet | 6 | 0.06 | 2.3e-07 | 7.2 | -6.6 | 4.5e-11 | -0.92 | 0.01 | 0.99 | FALSE |
38 | The Cancer Genome Atlas | Brain Lower Grade Glioma | NDUFS1 | 0.05 | 0.03 | blup | 51 | 0.04 | 6.2e-05 | 6.8 | -6.8 | 1.1e-11 | -0.87 | 0.03 | 0.96 | FALSE |
39 | The Cancer Genome Atlas | Thyroid Carcinoma | NDUFS1 | 0.07 | 0.04 | enet | 5 | 0.06 | 3.9e-06 | -3.2 | -5.5 | 4.6e-08 | -0.62 | 0.10 | 0.45 | FALSE |