[Hub]/) : Traits : Verbal and Numeric Reasoning (VNR) : ← →

chr10:102,853,189-104,392,497

Best TWAS P=1.35e-11 · Best GWAS P=1.85e-12 conditioned to 0.00107

#	Study	Tissue	Gene	h2	eQTL R2	model	# weights	model R2	model R2 P	eQTL GWAS Z	TWAS Z	TWAS P	Top SNP corr	PP3	PP4	joint
6	The Cancer Genome Atlas	Brain Lower Grade Glioma	NPM3	0.02	0.03	lasso	3	0.02	9.2e-04	6.3	-6.8	1.4e-11	0.65	0.01	0.79	TRUE
5	The Cancer Genome Atlas	Bladder Urothelial Carcinoma	GBF1	0.03	0.01	enet	8	0.04	2.1e-04	4.8	-5.4	7.4e-08	0.33	0.03	0.76	TRUE
3	GTEx	Testis	NPM3	0.13	0.15	lasso	3	0.13	2.5e-06	6.3	-6.4	1.6e-10	0.56	0.16	0.77	FALSE
7	The Cancer Genome Atlas	Testicular Germ Cell Tumors	C10orf76	0.19	0.20	lasso	1	0.18	4.6e-07	6.3	6.3	2.2e-10	-0.55	0.16	0.80	FALSE
2	GTEx	Pancreas	NPM3	0.20	0.15	lasso	4	0.07	5.4e-04	6.3	-5.8	7.0e-09	0.49	0.19	0.62	FALSE
1	CommonMind	Brain Pre-frontal Cortex	NPM3	0.03	0.01	lasso	2	0.03	1.2e-04	6.4	-5.5	3.7e-08	0.55	0.12	0.60	FALSE
4	ROSMAP	Brain Pre-frontal Cortex	NPM3	0.05	0.01	blup	257	0.04	1.5e-05	6.2	-5.3	9.0e-08	0.68	0.04	0.91	FALSE