998 significantly associated models · 190 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 1 | 31402148 | 32762733 | 2 | 1 | 1.1e-12 | 6.5e-12 | 1.0e+00 | 100 | PEF1 |
2 | 1 | 40799427 | 42542658 | 2 | 1 | 1.2e-14 | 1.6e-14 | 6.6e-07 | 58 | FOXO6 |
3 | 1 | 43476957 | 45088053 | 1 | 1 | 1.3e-07 | 7.9e-08 | 1.0e+00 | 100 | ST3GAL3 |
4 | 1 | 71163715 | 73435171 | 1 | 1 | 6.3e-18 | 1.2e-12 | 9.6e-01 | 100 | NEGR1 |
5 | 1 | 109154974 | 110742615 | 4 | 1 | 3.0e-08 | 2.4e-08 | 2.0e-01 | 95 | SORT1 |
6 | 1 | 171053153 | 172474017 | 1 | 1 | 1.6e-07 | 1.2e-07 | 2.4e-01 | 95 | METTL13 |
7 | 2 | 23453834 | 24924438 | 1 | 1 | 1.1e-07 | 3.4e-07 | 1.0e-01 | 90 | UBXN2A |
8 | 2 | 72774203 | 74604895 | 6 | 5 | 4.6e-11 | 8.3e-10 | NaN | NaN | ALMS1 ALMS1P FBXO41 PRADC1 |
9 | 2 | 99468341 | 101731705 | 3 | 1 | 8.3e-10 | 3.4e-11 | 1.3e-03 | 76 | CHST10 |
10 | 2 | 117979194 | 119470084 | 1 | 1 | 3.0e-08 | 7.4e-06 | 1.2e-02 | 68 | CCDC93 |
11 | 2 | 161297929 | 162790882 | 1 | 1 | 8.5e-09 | 3.2e-08 | 1.0e+00 | 100 | TANK |
12 | 2 | 200086752 | 201490349 | 1 | 1 | 2.2e-07 | 4.4e-06 | 5.1e-01 | 98 | C2orf69 |
13 | 3 | 23234618 | 24686628 | 4 | 2 | 5.8e-11 | 2.5e-15 | 5.1e-01 | 99 | NKIRAS1 NR1D2 |
14 | 3 | 48618666 | 51043528 | 23 | 1 | 3.4e-19 | 1.5e-18 | 3.0e-01 | 99 | RNF123 |
15 | 3 | 51616334 | 53985919 | 15 | 1 | 2.2e-10 | 2.3e-10 | 1.0e+00 | 100 | NT5DC2 |
16 | 3 | 70757099 | 71880670 | 1 | 1 | 9.1e-10 | 3.5e-09 | 1.0e+00 | 100 | FOXP1 |
17 | 4 | 17104059 | 18507692 | 2 | 1 | 4.7e-10 | 3.0e-09 | 1.9e-01 | 95 | DCAF16 |
18 | 4 | 87655053 | 89073197 | 2 | 1 | 2.2e-07 | 1.9e-06 | 7.9e-01 | 100 | NUDT9 |
19 | 4 | 105598022 | 107092169 | 1 | 1 | 1.9e-11 | 7.1e-15 | 7.1e-05 | 74 | PPA2 |
20 | 4 | 151637154 | 153373680 | 4 | 1 | 4.6e-09 | 2.3e-09 | 1.0e+00 | 100 | PET112 |
21 | 5 | 138860604 | 140745333 | 7 | 2 | 3.3e-11 | 1.1e-10 | 2.7e-01 | 97 | PFDN1 WDR55 |
22 | 5 | 176132977 | 177591495 | 2 | 1 | 5.7e-08 | 5.2e-09 | 1.0e+00 | 100 | DBN1 |
23 | 6 | 10842333 | 12277622 | 1 | 1 | 3.1e-08 | 1.3e-07 | 1.0e+00 | 100 | TMEM170B |
24 | 6 | 24382897 | 26689223 | 3 | 3 | 4.4e-08 | 6.4e-15 | 8.4e-06 | 67 | CMAH CMAHP U91328.21 |
25 | 6 | 108183628 | 109704062 | 1 | 1 | 2.5e-10 | 2.7e-15 | 2.0e-06 | 64 | FOXO3 |
26 | 7 | 70546596 | 72313144 | 1 | 1 | 1.7e-07 | 3.1e-09 | 3.7e-03 | 76 | CALN1 |
27 | 7 | 126529931 | 128425768 | 4 | 9 | 3.0e-10 | 1.8e-12 | NaN | NaN | GCC1 LRRC4 SND1 ZNF800 |
28 | 8 | 70799045 | 72220529 | 1 | 1 | 2.4e-08 | 4.2e-10 | 3.8e-07 | 34 | TRAM1 |
29 | 8 | 86841229 | 88211679 | 1 | 1 | 1.7e-07 | 1.0e-07 | 7.4e-02 | 89 | RMDN1 |
30 | 9 | 34382175 | 35792423 | 2 | 1 | 5.2e-08 | 8.5e-08 | 1.0e+00 | 100 | PIGO |
31 | 9 | 95518076 | 96910958 | 1 | 1 | 1.8e-07 | 6.2e-08 | 1.9e-02 | 81 | FAM120AOS |
32 | 10 | 102853189 | 104392497 | 3 | 2 | 1.4e-11 | 1.8e-12 | 1.1e-03 | 78 | GBF1 NPM3 |
33 | 11 | 46622392 | 48559571 | 9 | 1 | 5.9e-09 | 3.5e-08 | 6.5e-01 | 99 | C1QTNF4 |
34 | 11 | 94825532 | 96261289 | 1 | 1 | 1.5e-07 | 3.9e-06 | 3.4e-01 | 96 | CEP57 |
35 | 12 | 48698518 | 50199949 | 3 | 1 | 2.6e-09 | 3.4e-11 | 3.5e-03 | 80 | PRKAG1 |
36 | 12 | 55694116 | 57125879 | 3 | 1 | 1.4e-07 | 1.7e-07 | 1.0e+00 | 100 | RPS26 |
37 | 12 | 58087486 | 58550580 | 1 | 1 | 2.8e-08 | 2.4e-08 | 1.5e-01 | 93 | XRCC6BP1 |
38 | 12 | 122713991 | 124162750 | 2 | 1 | 1.2e-08 | 7.6e-07 | 6.0e-01 | 99 | ARL6IP4 |
39 | 14 | 36802009 | 37298875 | 1 | 1 | 1.8e-07 | 1.8e-09 | 2.8e-03 | 75 | NKX2-8 |
40 | 14 | 103466633 | 104859419 | 1 | 1 | 1.5e-07 | 5.4e-08 | 1.2e-02 | 79 | RP11-73M18.8 |
41 | 15 | 51736411 | 52257874 | 1 | 1 | 1.7e-07 | 1.3e-07 | 1.4e-04 | 48 | SCG3 |
42 | 16 | 27655848 | 29595483 | 23 | 1 | 5.7e-16 | 3.9e-14 | 6.3e-01 | 100 | EIF3C |
43 | 16 | 52772129 | 54235440 | 2 | 1 | 6.8e-13 | 2.8e-12 | 2.8e-01 | 98 | AKTIP |
44 | 17 | 7816838 | 8315649 | 1 | 1 | 6.9e-08 | 1.7e-06 | 5.1e-01 | 98 | VAMP2 |
45 | 17 | 17292491 | 18325085 | 1 | 1 | 1.4e-07 | 8.2e-08 | 6.1e-03 | 74 | DRG2 |
46 | 17 | 34146026 | 35675511 | 6 | 1 | 3.0e-10 | 2.4e-09 | 1.5e-01 | 94 | GGNBP2 |
47 | 17 | 43315547 | 43913030 | 1 | 1 | 2.0e-08 | 1.7e-06 | 1.1e-04 | 35 | MAPT |
48 | 19 | 17138985 | 18541785 | 1 | 1 | 2.3e-07 | 9.7e-08 | 2.1e-08 | -10 | MAP1S |
49 | 20 | 46840115 | 48591758 | 5 | 1 | 2.8e-17 | 7.5e-14 | 8.5e-01 | 100 | CSE1L |
50 | 21 | 18271223 | 19680363 | 1 | 1 | 2.1e-07 | 4.5e-08 | 1.0e+00 | 100 | BTG3 |
51 | 21 | 39856991 | 41390857 | 1 | 1 | 2.0e-07 | 3.9e-05 | 9.0e-01 | 100 | BRWD1 |
52 | 22 | 39101079 | 40571499 | 2 | 1 | 1.9e-11 | 2.1e-09 | 6.4e-04 | 68 | MGAT3 |
53 | 22 | 41531236 | 43229137 | 10 | 1 | 1.7e-10 | 2.2e-08 | 7.3e-01 | 100 | WBP2NL |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
GTEx | Vagina | 6 | 0.94 | 2.9 |
GTEx | Esophagus Gastroesophageal Junction | 16 | 1.11 | 2.8 |
GTEx | Ovary | 9 | 0.99 | 2.8 |
GTEx | Brain Cortex | 14 | 1.35 | 2.7 |
GTEx | Brain Frontal Cortex BA9 | 5 | 0.54 | 2.7 |
GTEx | Cells EBV-transformed lymphocytes | 12 | 0.84 | 2.7 |
GTEx | Colon Sigmoid | 15 | 1.03 | 2.7 |
GTEx | Spleen | 10 | 0.71 | 2.7 |
GTEx | Artery Aorta | 29 | 0.97 | 2.6 |
GTEx | Brain Cerebellar Hemisphere | 11 | 0.74 | 2.6 |
GTEx | Brain Cerebellum | 13 | 0.66 | 2.6 |
GTEx | Brain Hippocampus | 3 | 0.57 | 2.6 |
GTEx | Brain Putamen basal ganglia | 4 | 0.64 | 2.6 |
GTEx | Breast Mammary Tissue | 17 | 0.86 | 2.6 |
GTEx | Colon Transverse | 16 | 0.77 | 2.6 |
GTEx | Esophagus Mucosa | 26 | 0.78 | 2.6 |
GTEx | Esophagus Muscularis | 29 | 0.90 | 2.6 |
GTEx | Heart Atrial Appendage | 17 | 1.08 | 2.6 |
GTEx | Heart Left Ventricle | 14 | 0.91 | 2.6 |
GTEx | Liver | 5 | 0.70 | 2.6 |
GTEx | Skin Not Sun Exposed Suprapubic | 16 | 0.65 | 2.6 |
GTEx | Skin Sun Exposed Lower leg | 28 | 0.77 | 2.6 |
GTEx | Small Intestine Terminal Ileum | 3 | 0.65 | 2.6 |
GTEx | Stomach | 10 | 0.69 | 2.6 |
GTEx | Artery Tibial | 31 | 0.82 | 2.5 |
GTEx | Brain Caudate basal ganglia | 6 | 0.65 | 2.5 |
GTEx | Brain Hypothalamus | 3 | 0.51 | 2.5 |
GTEx | Brain Nucleus accumbens basal ganglia | 8 | 0.92 | 2.5 |
GTEx | Breast Mammary Tissue (Female) | 11 | 0.67 | 2.5 |
GTEx | Lung | 23 | 0.80 | 2.5 |
GTEx | Muscle Skeletal | 24 | 0.83 | 2.5 |
GTEx | Pancreas | 9 | 0.55 | 2.5 |
GTEx | Prostate | 6 | 0.72 | 2.5 |
GTEx | Uterus | 1 | 0.18 | 2.5 |
GTEx | Whole Blood | 12 | 0.60 | 2.5 |
ROSMAP | Brain Pre-frontal Cortex | 29 | 0.66 | 2.5 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 9 | 0.88 | 2.5 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 1 | 0.19 | 2.5 |
GTEx | Adipose Subcutaneous | 23 | 0.66 | 2.4 |
GTEx | Adipose Visceral Omentum | 12 | 0.59 | 2.4 |
GTEx | Artery Coronary | 8 | 0.68 | 2.4 |
GTEx | Breast Mammary Tissue (Male) | 7 | 0.59 | 2.4 |
GTEx | Cells Transformed fibroblasts | 31 | 0.74 | 2.4 |
GTEx | Nerve Tibial | 31 | 0.72 | 2.4 |
GTEx | Pituitary | 6 | 0.54 | 2.4 |
GTEx | Testis | 21 | 0.67 | 2.4 |
GTEx | Thyroid | 23 | 0.57 | 2.4 |
CommonMind | Brain Pre-frontal Cortex | 29 | 0.54 | 2.4 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 6 | 0.54 | 2.4 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 33 | 0.77 | 2.4 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 8 | 0.72 | 2.4 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 10 | 0.63 | 2.4 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 1 | 0.20 | 2.4 |
GTEx | Adrenal Gland | 6 | 0.41 | 2.3 |
NTR | Blood | 14 | 0.58 | 2.3 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 9 | 0.54 | 2.3 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 9 | 0.44 | 2.3 |
The Cancer Genome Atlas | Esophageal Carcinoma | 4 | 0.58 | 2.3 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 13 | 0.48 | 2.3 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 9 | 0.44 | 2.3 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 12 | 0.41 | 2.3 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 8 | 0.48 | 2.3 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 5 | 0.47 | 2.3 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 10 | 0.59 | 2.3 |
METSIM | Adipose | 25 | 0.54 | 2.2 |
YFS | Blood | 19 | 0.41 | 2.2 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 15 | 0.34 | 2.2 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 17 | 0.41 | 2.2 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 13 | 0.52 | 2.2 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 5 | 0.38 | 2.2 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 24 | 0.52 | 2.2 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 2 | 0.29 | 2.2 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 3 | 0.23 | 2.2 |
The Cancer Genome Atlas | Thyroid Carcinoma | 26 | 0.50 | 2.2 |