TWAS
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Usage
Models
Genes
Traits
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Traits
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Blood White Count
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chr6:125,970,401-127,355,237
Best TWAS P=1.32e-18 · Best GWAS P=1.51e-19 conditioned to 0.0207
126M
126.2M
126.4M
126.6M
126.8M
127M
127.2M
127.4M
0
5
10
15
20
physical position
-log10 P
Conditional
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
1
CommonMind
Brain Pre-frontal Cortex
CENPW
0.04
0.06
lasso
10
0.06
2.4e-07
-8.7
8.8
1.3e-18
-0.93
0.06
0.94
TRUE
4
The Cancer Genome Atlas
Kidney Renal Clear Cell Carcinoma
CENPW
0.04
0.05
lasso
5
0.05
2.6e-06
-8.7
8.3
7.3e-17
-0.90
0.02
0.98
FALSE
5
The Cancer Genome Atlas
Brain Lower Grade Glioma
CENPW
0.04
0.06
blup
35
0.05
9.2e-07
-8.6
8.3
1.4e-16
-0.90
0.02
0.98
FALSE
2
GTEx
Heart Atrial Appendage
CENPW
0.17
0.01
enet
15
0.06
1.8e-03
-8.5
7.0
2.1e-12
-0.67
0.04
0.37
FALSE
3
METSIM
Adipose
CENPW
0.02
0.02
blup
189
0.01
8.3e-03
-8.5
6.0
1.8e-09
-0.71
0.04
0.54
FALSE