Best TWAS P=1.04e-15 · Best GWAS P=6.83e-12 conditioned to 0.766
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | ZNF786 | 0.11 | 0.15 | lasso | 6 | 0.14 | 4.3e-17 | 6.1 | -6.1 | 8.5e-10 | -0.88 | 0.19 | 0.81 | FALSE |
2 | GTEx | Adipose Subcutaneous | ZNF786 | 0.13 | 0.09 | lasso | 3 | 0.08 | 3.5e-07 | 6.1 | -6.1 | 8.6e-10 | -0.90 | 0.12 | 0.88 | FALSE |
3 | GTEx | Adipose Visceral Omentum | ZNF786 | 0.14 | 0.12 | lasso | 5 | 0.11 | 2.8e-06 | 6.0 | -5.6 | 2.2e-08 | -0.85 | 0.19 | 0.79 | FALSE |
4 | GTEx | Adrenal Gland | ZNF786 | 0.36 | 0.20 | lasso | 12 | 0.26 | 5.2e-10 | 6.4 | -8.0 | 1.0e-15 | -0.87 | 0.02 | 0.98 | TRUE |
5 | GTEx | Artery Aorta | ZNF786 | 0.16 | 0.04 | lasso | 2 | 0.07 | 1.2e-04 | 6.2 | -6.0 | 1.8e-09 | -0.88 | 0.06 | 0.93 | FALSE |
6 | GTEx | Artery Tibial | ZNF786 | 0.12 | 0.10 | lasso | 2 | 0.11 | 1.2e-08 | 6.1 | -6.3 | 3.5e-10 | -0.92 | 0.08 | 0.92 | FALSE |
7 | GTEx | Brain Cerebellar Hemisphere | ZNF786 | 0.37 | 0.25 | enet | 19 | 0.22 | 2.7e-06 | 6.0 | -6.0 | 2.7e-09 | -0.88 | 0.04 | 0.96 | FALSE |
8 | GTEx | Brain Cerebellum | ZNF786 | 0.43 | 0.23 | lasso | 9 | 0.28 | 6.7e-09 | 6.0 | -6.0 | 2.7e-09 | -0.89 | 0.05 | 0.95 | FALSE |
9 | GTEx | Brain Cortex | ZNF786 | 0.43 | 0.27 | lasso | 11 | 0.28 | 1.9e-08 | 6.2 | -6.1 | 1.4e-09 | -0.89 | 0.06 | 0.94 | FALSE |
10 | GTEx | Brain Frontal Cortex BA9 | ZNF786 | 0.40 | 0.28 | lasso | 6 | 0.32 | 3.7e-09 | 6.1 | -5.3 | 9.9e-08 | -0.80 | 0.06 | 0.94 | FALSE |
11 | GTEx | Brain Hypothalamus | ZNF786 | 0.30 | 0.25 | lasso | 5 | 0.23 | 3.7e-06 | 6.0 | -6.2 | 6.0e-10 | -0.92 | 0.02 | 0.96 | FALSE |
12 | GTEx | Brain Hypothalamus | ZNF783 | 0.25 | 0.14 | lasso | 5 | 0.05 | 3.1e-02 | 6.1 | 6.4 | 1.6e-10 | 0.83 | 0.06 | 0.61 | FALSE |
13 | GTEx | Brain Nucleus accumbens basal ganglia | ZNF786 | 0.18 | 0.24 | lasso | 3 | 0.16 | 3.7e-05 | 6.0 | -6.0 | 1.7e-09 | -0.86 | 0.06 | 0.89 | FALSE |
14 | GTEx | Breast Mammary Tissue | ZNF786 | 0.12 | 0.10 | enet | 6 | 0.08 | 5.3e-05 | 6.0 | -6.0 | 1.4e-09 | -0.86 | 0.08 | 0.92 | FALSE |
15 | GTEx | Breast Mammary Tissue (Female) | ZNF786 | 0.10 | 0.17 | lasso | 1 | 0.10 | 8.8e-04 | 6.0 | -6.0 | 2.0e-09 | -0.85 | 0.08 | 0.69 | FALSE |
16 | GTEx | Cells Transformed fibroblasts | ZNF786 | 0.17 | 0.14 | lasso | 4 | 0.14 | 2.2e-10 | 6.2 | -5.9 | 3.9e-09 | -0.83 | 0.16 | 0.84 | FALSE |
17 | GTEx | Colon Transverse | ZNF786 | 0.15 | 0.10 | enet | 8 | 0.11 | 7.9e-06 | 6.0 | -6.2 | 5.6e-10 | -0.93 | 0.02 | 0.98 | FALSE |
18 | GTEx | Esophagus Mucosa | ZNF786 | 0.25 | 0.20 | lasso | 4 | 0.21 | 4.7e-14 | 6.0 | -5.7 | 1.6e-08 | -0.85 | 0.21 | 0.79 | FALSE |
19 | GTEx | Esophagus Mucosa | ZNF425 | 0.07 | 0.01 | enet | 11 | 0.02 | 2.3e-02 | 6.0 | -5.8 | 6.4e-09 | -0.69 | 0.08 | 0.38 | FALSE |
20 | GTEx | Esophagus Muscularis | ZNF786 | 0.07 | 0.05 | lasso | 4 | 0.04 | 9.9e-04 | 6.1 | -6.1 | 8.9e-10 | -0.88 | 0.13 | 0.77 | FALSE |
21 | GTEx | Heart Left Ventricle | ZNF786 | 0.18 | 0.11 | lasso | 7 | 0.08 | 3.7e-05 | 6.0 | -6.2 | 4.5e-10 | -0.88 | 0.05 | 0.95 | FALSE |
22 | GTEx | Liver | ZNF786 | 0.27 | 0.16 | lasso | 3 | 0.12 | 2.6e-04 | 6.1 | -6.0 | 2.0e-09 | -0.85 | 0.03 | 0.86 | FALSE |
23 | GTEx | Lung | ZNF786 | 0.15 | 0.16 | lasso | 6 | 0.14 | 4.5e-11 | 6.0 | -6.0 | 2.2e-09 | -0.87 | 0.22 | 0.78 | FALSE |
24 | GTEx | Muscle Skeletal | ZNF786 | 0.06 | 0.00 | enet | 13 | 0.00 | 2.8e-01 | 6.0 | -5.9 | 4.7e-09 | -0.61 | 0.07 | 0.37 | FALSE |
25 | GTEx | Nerve Tibial | ZNF786 | 0.11 | 0.09 | lasso | 2 | 0.07 | 1.2e-05 | 6.1 | -6.2 | 6.7e-10 | -0.87 | 0.15 | 0.85 | FALSE |
26 | GTEx | Pancreas | ZNF786 | 0.33 | 0.28 | enet | 34 | 0.29 | 9.2e-13 | 6.1 | -5.9 | 3.7e-09 | -0.80 | 0.17 | 0.83 | FALSE |
27 | GTEx | Pituitary | ZNF786 | 0.48 | 0.29 | lasso | 4 | 0.35 | 1.4e-09 | 6.2 | -6.1 | 9.3e-10 | -0.87 | 0.12 | 0.88 | FALSE |
28 | GTEx | Prostate | ZNF786 | 0.22 | 0.12 | lasso | 4 | 0.11 | 1.1e-03 | 6.0 | -5.8 | 7.7e-09 | -0.86 | 0.06 | 0.82 | FALSE |
29 | GTEx | Skin Not Sun Exposed Suprapubic | ZNF786 | 0.17 | 0.04 | enet | 34 | 0.07 | 1.9e-04 | 6.2 | -7.2 | 4.2e-13 | -0.72 | 0.07 | 0.90 | FALSE |
30 | GTEx | Small Intestine Terminal Ileum | ZNF786 | 0.31 | 0.20 | lasso | 7 | 0.20 | 3.6e-05 | 6.9 | -6.9 | 4.5e-12 | -0.97 | 0.02 | 0.96 | FALSE |
31 | GTEx | Spleen | ZNF786 | 0.41 | 0.30 | lasso | 6 | 0.36 | 4.2e-10 | 6.0 | -6.0 | 1.4e-09 | -0.87 | 0.15 | 0.84 | FALSE |
32 | GTEx | Stomach | ZNF786 | 0.20 | 0.12 | enet | 16 | 0.09 | 6.8e-05 | 6.2 | -7.0 | 2.4e-12 | -0.72 | 0.11 | 0.86 | FALSE |
33 | GTEx | Stomach | ZNF425 | 0.11 | 0.01 | lasso | 3 | 0.02 | 4.8e-02 | 6.1 | -5.7 | 1.4e-08 | -0.84 | 0.06 | 0.75 | FALSE |
34 | GTEx | Testis | ZNF786 | 0.17 | 0.02 | lasso | 3 | 0.03 | 1.6e-02 | 5.5 | -6.8 | 9.1e-12 | -0.70 | 0.06 | 0.48 | FALSE |
35 | GTEx | Thyroid | ZNF786 | 0.21 | 0.21 | lasso | 5 | 0.22 | 3.7e-17 | 6.1 | -6.0 | 1.4e-09 | -0.87 | 0.20 | 0.80 | FALSE |
36 | GTEx | Whole Blood | ZNF282 | 0.19 | 0.13 | lasso | 8 | 0.12 | 4.2e-11 | 6.1 | -6.2 | 4.3e-10 | -0.89 | 0.06 | 0.94 | FALSE |
37 | GTEx | Whole Blood | ZNF786 | 0.06 | 0.01 | enet | 6 | 0.03 | 1.4e-03 | 6.1 | -5.6 | 2.4e-08 | -0.84 | 0.02 | 0.98 | FALSE |
38 | METSIM | Adipose | ZNF786 | 0.09 | 0.13 | enet | 32 | 0.13 | 7.7e-19 | 6.2 | -6.2 | 4.6e-10 | -0.88 | 0.10 | 0.90 | FALSE |
39 | ROSMAP | Brain Pre-frontal Cortex | ZNF786 | 0.31 | 0.50 | enet | 15 | 0.50 | 2.4e-73 | 6.1 | -6.1 | 9.9e-10 | -0.88 | 0.21 | 0.79 | FALSE |
40 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | ZNF786 | 0.16 | 0.10 | blup | 29 | 0.12 | 1.9e-10 | 6.1 | -5.6 | 2.1e-08 | -0.79 | 0.01 | 0.99 | FALSE |
41 | The Cancer Genome Atlas | Breast Invasive Carcinoma | ZNF398 | 0.02 | 0.00 | blup | 65 | 0.01 | 4.3e-03 | 6.4 | 6.3 | 3.5e-10 | 0.87 | 0.02 | 0.80 | FALSE |
42 | The Cancer Genome Atlas | Breast Invasive Carcinoma | ZNF786 | 0.05 | 0.09 | lasso | 2 | 0.09 | 9.2e-18 | 5.7 | -5.7 | 1.4e-08 | -0.85 | 0.02 | 0.98 | FALSE |
43 | The Cancer Genome Atlas | Colon Adenocarcinoma | ZNF425 | 0.04 | 0.06 | lasso | 3 | 0.06 | 4.0e-04 | 6.1 | -6.0 | 1.7e-09 | -0.88 | 0.01 | 0.92 | FALSE |
44 | The Cancer Genome Atlas | Colon Adenocarcinoma | ZNF786 | 0.12 | 0.20 | blup | 29 | 0.19 | 3.0e-11 | 6.2 | -6.0 | 2.2e-09 | -0.84 | 0.01 | 0.99 | FALSE |
45 | The Cancer Genome Atlas | Esophageal Carcinoma | ZNF786 | 0.21 | 0.29 | lasso | 4 | 0.26 | 7.2e-09 | 6.1 | -6.0 | 1.6e-09 | -0.87 | 0.01 | 0.99 | FALSE |
46 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | ZNF786 | 0.06 | 0.05 | lasso | 2 | 0.04 | 1.4e-05 | 6.0 | -6.0 | 2.6e-09 | -0.86 | 0.02 | 0.96 | FALSE |
47 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | ZNF786 | 0.08 | 0.11 | lasso | 5 | 0.10 | 2.9e-11 | 6.2 | -6.0 | 2.4e-09 | -0.85 | 0.01 | 0.99 | FALSE |
48 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | ZNF786 | 0.11 | 0.19 | lasso | 1 | 0.17 | 5.2e-10 | 6.2 | -6.2 | 6.3e-10 | -0.88 | 0.01 | 0.99 | FALSE |
49 | The Cancer Genome Atlas | Brain Lower Grade Glioma | ZNF786 | 0.03 | 0.05 | lasso | 1 | 0.04 | 1.1e-05 | 6.2 | -6.2 | 6.2e-10 | -0.87 | 0.01 | 0.99 | FALSE |
50 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | ZNF786 | 0.15 | 0.15 | blup | 29 | 0.16 | 5.7e-08 | 6.0 | -5.6 | 2.4e-08 | -0.84 | 0.02 | 0.98 | FALSE |
51 | The Cancer Genome Atlas | Lung Adenocarcinoma | ZNF786 | 0.06 | 0.08 | lasso | 3 | 0.08 | 7.8e-10 | 5.7 | -5.8 | 8.2e-09 | -0.86 | 0.02 | 0.98 | FALSE |
52 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | ZNF786 | 0.02 | 0.03 | enet | 4 | 0.02 | 2.1e-03 | 6.2 | -5.5 | 4.2e-08 | -0.82 | 0.01 | 0.97 | FALSE |
53 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | ZNF786 | 0.08 | 0.09 | lasso | 2 | 0.09 | 9.4e-07 | 6.0 | -6.0 | 2.6e-09 | -0.86 | 0.02 | 0.98 | FALSE |
54 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | ZNF786 | 0.12 | 0.19 | lasso | 3 | 0.16 | 2.7e-07 | 6.1 | -6.0 | 2.2e-09 | -0.88 | 0.01 | 0.99 | FALSE |
55 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | ZNF786 | 0.13 | 0.13 | blup | 29 | 0.12 | 2.1e-05 | 5.7 | -5.8 | 4.9e-09 | -0.84 | 0.01 | 0.98 | FALSE |
56 | The Cancer Genome Atlas | Prostate Adenocarcinoma | ZNF786 | 0.17 | 0.25 | lasso | 4 | 0.24 | 2.6e-24 | 6.1 | -6.0 | 1.8e-09 | -0.86 | 0.01 | 0.99 | FALSE |
57 | The Cancer Genome Atlas | Soft Tissue Sarcoma | ZNF786 | 0.06 | 0.08 | blup | 29 | 0.07 | 9.8e-05 | 6.1 | -5.9 | 3.7e-09 | -0.82 | 0.01 | 0.97 | FALSE |
58 | The Cancer Genome Atlas | Stomach Adenocarcinoma | ZNF786 | 0.10 | 0.10 | blup | 29 | 0.10 | 9.5e-08 | 6.2 | -5.8 | 6.1e-09 | -0.84 | 0.01 | 0.99 | FALSE |
59 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | ZNF786 | 0.11 | 0.01 | enet | 6 | 0.05 | 7.0e-03 | 6.0 | -5.5 | 3.2e-08 | -0.78 | 0.01 | 0.75 | FALSE |
60 | The Cancer Genome Atlas | Thyroid Carcinoma | ZNF786 | 0.10 | 0.14 | lasso | 6 | 0.15 | 1.0e-14 | 6.0 | -5.8 | 6.1e-09 | -0.83 | 0.02 | 0.98 | FALSE |