TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Blood Platelet Count
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chr9:92,867,363-94,352,661
Best TWAS P=6.81e-24 · Best GWAS P=3.89e-24 conditioned to 1
92.8M
93M
93.2M
93.4M
93.6M
93.8M
94M
94.2M
94.4M
0
5
10
15
20
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
2
GTEx
Testis
SYK
0.29
0.30
lasso
2
0.30
1.3e-13
10
-10.1
6.8e-24
-0.99
0
1
TRUE
4
YFS
Blood
SYK
0.20
0.14
bslmm
594
0.15
1.5e-45
10
-9.6
5.6e-22
-0.87
0
1
FALSE
5
The Cancer Genome Atlas
Prostate Adenocarcinoma
SYK
0.09
0.07
lasso
5
0.06
3.8e-07
10
-9.6
1.2e-21
-0.98
0
1
FALSE
1
GTEx
Nerve Tibial
SYK
0.49
0.22
lasso
7
0.29
4.8e-21
10
-8.5
1.3e-17
-0.85
0
1
FALSE
3
NTR
Blood
SYK
0.10
0.05
bslmm
603
0.07
2.4e-21
10
-5.6
2.7e-08
-0.75
0
1
FALSE