Best TWAS P=0 · Best GWAS P=0 conditioned to NaN
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | EXOC2 | 0.24 | 0.11 | lasso | 15 | 0.22 | 8.8e-27 | 19.2 | 46.3 | 0.0e+00 | -0.13 | 1.00 | 0.00 | TRUE |
2 | GTEx | Adipose Subcutaneous | EXOC2 | 0.16 | 0.06 | lasso | 6 | 0.09 | 6.1e-08 | 14.8 | 21.5 | 2.2e-102 | -0.07 | 0.96 | 0.00 | TRUE |
3 | GTEx | Adipose Visceral Omentum | EXOC2 | 0.13 | 0.07 | lasso | 3 | 0.07 | 1.0e-04 | 19.4 | 19.8 | 4.6e-87 | -0.04 | 0.82 | 0.02 | FALSE |
4 | GTEx | Artery Aorta | EXOC2 | 0.33 | 0.10 | lasso | 10 | 0.09 | 1.3e-05 | 19.2 | 33.6 | 2.6e-247 | -0.09 | 0.86 | 0.01 | TRUE |
5 | GTEx | Artery Tibial | EXOC2 | 0.21 | 0.16 | lasso | 4 | 0.18 | 3.2e-14 | 14.8 | 20.3 | 2.7e-91 | -0.09 | 1.00 | 0.00 | FALSE |
6 | GTEx | Cells Transformed fibroblasts | EXOC2 | 0.23 | 0.16 | lasso | 4 | 0.16 | 4.0e-12 | 19.2 | 22.0 | 2.7e-107 | -0.02 | 1.00 | 0.00 | FALSE |
7 | GTEx | Colon Sigmoid | EXOC2 | 0.37 | 0.07 | lasso | 10 | 0.03 | 2.6e-02 | 19.2 | 17.7 | 8.4e-70 | 0.00 | 0.30 | 0.03 | TRUE |
8 | GTEx | Colon Transverse | EXOC2 | 0.31 | 0.00 | lasso | 11 | 0.03 | 2.2e-02 | 15.4 | 20.3 | 1.3e-91 | -0.05 | 0.34 | 0.03 | TRUE |
9 | GTEx | Esophagus Mucosa | EXOC2 | 0.29 | 0.12 | lasso | 6 | 0.09 | 1.4e-06 | 21.9 | 29.9 | 4.2e-196 | -0.08 | 0.98 | 0.00 | FALSE |
10 | GTEx | Esophagus Muscularis | EXOC2 | 0.22 | 0.04 | enet | 9 | 0.09 | 4.2e-06 | 21.9 | 51.1 | 0.0e+00 | -0.15 | 0.80 | 0.05 | TRUE |
11 | GTEx | Heart Atrial Appendage | EXOC2 | 0.42 | 0.17 | enet | 51 | 0.20 | 2.1e-09 | 29.5 | 40.8 | 0.0e+00 | -0.08 | 0.92 | 0.00 | FALSE |
12 | GTEx | Heart Left Ventricle | EXOC2 | 0.33 | 0.12 | enet | 16 | 0.11 | 2.9e-06 | 15.0 | 34.4 | 8.0e-260 | -0.12 | 0.93 | 0.01 | FALSE |
13 | GTEx | Lung | EXOC2 | 0.15 | 0.07 | lasso | 4 | 0.08 | 1.8e-06 | 14.8 | 16.9 | 6.3e-64 | -0.09 | 0.98 | 0.00 | FALSE |
14 | GTEx | Muscle Skeletal | EXOC2 | 0.21 | 0.06 | lasso | 8 | 0.09 | 2.1e-09 | 19.2 | 22.9 | 1.1e-115 | -0.06 | 1.00 | 0.00 | FALSE |
15 | GTEx | Nerve Tibial | EXOC2 | 0.22 | 0.17 | lasso | 3 | 0.19 | 2.7e-13 | 21.9 | 24.7 | 2.6e-134 | -0.08 | 1.00 | 0.00 | FALSE |
16 | GTEx | Pituitary | EXOC2 | 0.41 | 0.15 | enet | 21 | 0.18 | 2.5e-05 | 15.4 | 9.3 | 8.8e-21 | -0.03 | 0.45 | 0.05 | FALSE |
17 | GTEx | Skin Sun Exposed Lower leg | EXOC2 | 0.10 | 0.01 | enet | 11 | 0.05 | 1.2e-04 | 22.5 | 37.1 | 6.3e-301 | -0.11 | 0.56 | 0.02 | FALSE |
18 | METSIM | Adipose | EXOC2 | 0.10 | 0.04 | lasso | 11 | 0.06 | 9.8e-10 | 19.2 | 37.4 | 7.6e-306 | -0.08 | 1.00 | 0.00 | TRUE |
19 | METSIM | Adipose | RP11-532F6.3 | 0.28 | 0.27 | lasso | 3 | 0.27 | 1.2e-40 | 14.0 | -14.0 | 1.1e-44 | -0.02 | 1.00 | 0.00 | FALSE |
20 | NTR | Blood | EXOC2 | 0.03 | 0.00 | bslmm | 624 | 0.01 | 3.4e-04 | 46.0 | 38.6 | 0.0e+00 | -0.06 | 0.50 | 0.01 | FALSE |
21 | ROSMAP | Brain Pre-frontal Cortex | EXOC2 | 0.07 | 0.02 | lasso | 5 | 0.05 | 1.8e-07 | 52.5 | 48.2 | 0.0e+00 | -0.13 | 0.72 | 0.03 | TRUE |
22 | YFS | Blood | EXOC2 | 0.05 | 0.02 | lasso | 5 | 0.02 | 9.7e-09 | 54.1 | 59.9 | 0.0e+00 | -0.12 | 1.00 | 0.00 | TRUE |
23 | YFS | Blood | IRF4 | 0.03 | 0.00 | bslmm | 417 | 0.00 | 2.2e-01 | 3.3 | 22.1 | 2.1e-108 | -0.02 | 0.05 | 0.04 | TRUE |
24 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | EXOC2 | 0.11 | 0.00 | blup | 203 | 0.03 | 1.7e-03 | 16.9 | 45.1 | 0.0e+00 | -0.19 | 0.06 | 0.18 | TRUE |
25 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | EXOC2 | 0.05 | 0.02 | blup | 204 | 0.03 | 3.9e-04 | 52.8 | 57.2 | 0.0e+00 | -0.13 | 0.36 | 0.15 | TRUE |
26 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | EXOC2 | 0.18 | 0.03 | blup | 203 | 0.10 | 1.4e-11 | 19.2 | 14.1 | 5.5e-45 | 0.00 | 0.94 | 0.00 | FALSE |
27 | The Cancer Genome Atlas | Brain Lower Grade Glioma | EXOC2 | 0.07 | 0.06 | lasso | 5 | 0.06 | 2.6e-07 | 52.5 | 50.9 | 0.0e+00 | -0.07 | 0.91 | 0.01 | TRUE |
28 | The Cancer Genome Atlas | Lung Adenocarcinoma | EXOC2 | 0.10 | 0.01 | blup | 204 | 0.03 | 6.8e-05 | 52.8 | 37.0 | 4.7e-300 | -0.04 | 0.18 | 0.03 | FALSE |
29 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | EXOC2 | 0.40 | 0.06 | blup | 204 | 0.14 | 3.8e-06 | 36.9 | 23.5 | 7.6e-122 | 0.02 | 0.21 | 0.04 | FALSE |
30 | The Cancer Genome Atlas | Prostate Adenocarcinoma | EXOC2 | 0.14 | 0.02 | blup | 203 | 0.06 | 3.1e-07 | 19.2 | 42.7 | 0.0e+00 | -0.14 | 0.69 | 0.02 | FALSE |