Best TWAS P=5.07e-10 · Best GWAS P=2.4e-12 conditioned to 9.76e-06
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | CommonMind | Brain Pre-frontal Cortex | CNTN4 | 0.15 | 0.03 | enet | 34 | 0.05 | 4.7e-07 | 4.8 | 6.2 | 5.1e-10 | 0.52 | 0.02 | 0.98 | TRUE |
| 2 | The Cancer Genome Atlas | Thyroid Carcinoma | CNTN4 | 0.19 | 0.13 | lasso | 5 | 0.14 | 3.7e-13 | 6.0 | 6.1 | 1.1e-09 | 0.74 | 0.80 | 0.20 | FALSE |