TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Crohns Disease (2017)
:
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chr1:160,559,549-161,098,128
Best TWAS P=1.7e-07 · Best GWAS P=3.67e-08 conditioned to 0.00367
160.6M
160.7M
160.8M
160.9M
161M
161.1M
0
2
4
6
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
4
The Cancer Genome Atlas
Uterine Corpus Endometrial Carcinoma
ITLN1
0.13
0.13
lasso
1
0.13
2.2e-04
-5.2
5.2
1.7e-07
-0.61
0.03
0.78
TRUE
3
The Cancer Genome Atlas
Lung Adenocarcinoma
CD244
0.03
0.00
blup
59
0.02
5.7e-04
-5.0
-5.2
2.0e-07
0.91
0.02
0.94
FALSE
2
The Cancer Genome Atlas
Brain Lower Grade Glioma
CD244
0.05
0.05
lasso
2
0.05
3.2e-06
-5.1
-5.2
2.4e-07
0.99
0.01
0.99
FALSE
1
The Cancer Genome Atlas
Kidney Renal Clear Cell Carcinoma
CD244
0.07
0.08
lasso
3
0.08
1.1e-09
-5.0
-5.1
3.0e-07
0.98
0.01
0.99
FALSE