Best TWAS P=3.36e-50 · Best GWAS P=5.29e-50 conditioned to 0.00189
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Subcutaneous | WAC-AS1 | 0.39 | 0.46 | lasso | 5 | 0.45 | 1.1e-40 | -14.5 | -14.5 | 7.0e-48 | 0.94 | 0.14 | 0.86 | FALSE |
2 | GTEx | Adipose Visceral Omentum | WAC-AS1 | 0.21 | 0.17 | enet | 16 | 0.18 | 2.0e-09 | -14.5 | -14.3 | 1.7e-46 | 0.91 | 0.06 | 0.94 | FALSE |
3 | GTEx | Adrenal Gland | WAC-AS1 | 0.28 | 0.19 | lasso | 4 | 0.14 | 7.2e-06 | -14.5 | -14.4 | 6.3e-47 | 0.93 | 0.14 | 0.83 | FALSE |
4 | GTEx | Artery Aorta | WAC-AS1 | 0.39 | 0.38 | lasso | 6 | 0.38 | 3.1e-22 | -14.5 | -14.5 | 1.1e-47 | 0.93 | 0.14 | 0.86 | FALSE |
5 | GTEx | Artery Coronary | WAC-AS1 | 0.41 | 0.21 | lasso | 6 | 0.19 | 4.0e-07 | -14.5 | -14.9 | 3.4e-50 | 0.91 | 0.14 | 0.85 | TRUE |
6 | GTEx | Artery Tibial | WAC | 0.10 | 0.00 | enet | 32 | 0.00 | 5.6e-01 | 5.5 | 5.2 | 2.0e-07 | -0.41 | 0.07 | 0.18 | FALSE |
7 | GTEx | Artery Tibial | WAC-AS1 | 0.44 | 0.43 | lasso | 4 | 0.44 | 4.0e-37 | -14.6 | -14.4 | 3.8e-47 | 0.95 | 0.09 | 0.91 | FALSE |
8 | GTEx | Brain Hippocampus | WAC-AS1 | 0.29 | 0.01 | enet | 10 | -0.01 | 8.5e-01 | -11.8 | -12.5 | 5.5e-36 | 0.77 | 0.06 | 0.32 | FALSE |
9 | GTEx | Brain Nucleus accumbens basal ganglia | WAC-AS1 | 0.38 | 0.07 | enet | 11 | 0.08 | 4.3e-03 | -14.6 | -12.6 | 1.6e-36 | 0.81 | 0.01 | 0.91 | FALSE |
10 | GTEx | Breast Mammary Tissue | WAC-AS1 | 0.29 | 0.32 | lasso | 2 | 0.31 | 2.1e-16 | -14.5 | -14.5 | 9.4e-48 | 0.95 | 0.12 | 0.88 | FALSE |
11 | GTEx | Breast Mammary Tissue (Female) | WAC-AS1 | 0.30 | 0.30 | enet | 13 | 0.33 | 1.7e-10 | -14.5 | -14.4 | 2.8e-47 | 0.94 | 0.12 | 0.88 | FALSE |
12 | GTEx | Cells EBV-transformed lymphocytes | WAC-AS1 | 0.45 | 0.36 | enet | 12 | 0.41 | 1.1e-14 | -14.5 | -13.7 | 1.9e-42 | 0.85 | 0.14 | 0.86 | FALSE |
13 | GTEx | Cells Transformed fibroblasts | WAC-AS1 | 0.58 | 0.62 | lasso | 12 | 0.64 | 9.7e-62 | -14.5 | -14.6 | 4.3e-48 | 0.94 | 0.15 | 0.85 | FALSE |
14 | GTEx | Colon Sigmoid | WAC-AS1 | 0.36 | 0.23 | lasso | 9 | 0.22 | 2.6e-08 | -14.6 | -14.3 | 2.0e-46 | 0.92 | 0.10 | 0.90 | FALSE |
15 | GTEx | Colon Transverse | WAC-AS1 | 0.36 | 0.17 | enet | 16 | 0.31 | 3.6e-15 | -8.1 | -12.7 | 4.8e-37 | 0.76 | 0.22 | 0.78 | FALSE |
16 | GTEx | Esophagus Gastroesophageal Junction | WAC-AS1 | 0.37 | 0.16 | lasso | 6 | 0.20 | 9.1e-08 | -14.0 | -14.4 | 1.0e-46 | 0.88 | 0.25 | 0.74 | FALSE |
17 | GTEx | Esophagus Mucosa | WAC-AS1 | 0.52 | 0.44 | lasso | 16 | 0.51 | 1.2e-38 | -14.5 | -14.0 | 9.8e-45 | 0.87 | 0.14 | 0.86 | FALSE |
18 | GTEx | Esophagus Muscularis | WAC-AS1 | 0.37 | 0.29 | enet | 32 | 0.38 | 5.5e-24 | -14.5 | -11.7 | 1.6e-31 | 0.78 | 0.15 | 0.85 | FALSE |
19 | GTEx | Heart Atrial Appendage | WAC-AS1 | 0.18 | 0.12 | enet | 6 | 0.15 | 2.5e-07 | -14.6 | -14.1 | 2.3e-45 | 0.89 | 0.08 | 0.92 | FALSE |
20 | GTEx | Heart Left Ventricle | WAC-AS1 | 0.39 | 0.08 | lasso | 8 | 0.20 | 1.3e-10 | -8.1 | -10.7 | 8.6e-27 | 0.63 | 0.69 | 0.30 | FALSE |
21 | GTEx | Liver | WAC-AS1 | 0.37 | 0.34 | lasso | 3 | 0.34 | 3.1e-10 | -14.5 | -14.6 | 3.5e-48 | 0.97 | 0.11 | 0.89 | FALSE |
22 | GTEx | Lung | WAC-AS1 | 0.32 | 0.13 | enet | 26 | 0.24 | 4.7e-18 | -14.5 | -13.5 | 1.3e-41 | 0.83 | 0.19 | 0.81 | FALSE |
23 | GTEx | Muscle Skeletal | WAC-AS1 | 0.29 | 0.15 | enet | 26 | 0.22 | 8.7e-21 | -8.1 | -11.4 | 3.4e-30 | 0.71 | 0.58 | 0.42 | FALSE |
24 | GTEx | Nerve Tibial | WAC-AS1 | 0.45 | 0.55 | lasso | 5 | 0.56 | 1.4e-46 | -14.5 | -14.6 | 4.3e-48 | 0.95 | 0.13 | 0.87 | FALSE |
25 | GTEx | Pancreas | WAC-AS1 | 0.45 | 0.33 | lasso | 8 | 0.34 | 6.4e-15 | -14.5 | -14.6 | 1.4e-48 | 0.94 | 0.14 | 0.86 | FALSE |
26 | GTEx | Skin Not Sun Exposed Suprapubic | WAC-AS1 | 0.48 | 0.48 | enet | 37 | 0.56 | 6.1e-37 | -14.6 | -14.0 | 2.3e-44 | 0.87 | 0.10 | 0.90 | FALSE |
27 | GTEx | Skin Sun Exposed Lower leg | WAC-AS1 | 0.34 | 0.39 | enet | 21 | 0.45 | 7.7e-41 | -14.6 | -14.0 | 9.1e-45 | 0.90 | 0.09 | 0.91 | FALSE |
28 | GTEx | Spleen | WAC-AS1 | 0.38 | 0.22 | lasso | 5 | 0.15 | 1.3e-04 | 4.5 | -6.4 | 1.6e-10 | 0.33 | 0.42 | 0.15 | FALSE |
29 | GTEx | Stomach | WAC-AS1 | 0.39 | 0.31 | lasso | 8 | 0.33 | 1.1e-16 | -14.5 | -14.4 | 8.9e-47 | 0.91 | 0.16 | 0.84 | FALSE |
30 | GTEx | Testis | WAC-AS1 | 0.45 | 0.47 | lasso | 3 | 0.48 | 4.3e-24 | -14.5 | -14.6 | 4.7e-48 | 0.96 | 0.12 | 0.88 | FALSE |
31 | GTEx | Thyroid | WAC-AS1 | 0.21 | 0.13 | enet | 12 | 0.20 | 1.6e-15 | -14.5 | -13.1 | 2.9e-39 | 0.79 | 0.16 | 0.84 | FALSE |
32 | GTEx | Vagina | WAC-AS1 | 0.55 | 0.25 | lasso | 5 | 0.22 | 1.0e-05 | -14.6 | -14.1 | 2.9e-45 | 0.92 | 0.04 | 0.94 | FALSE |
33 | GTEx | Whole Blood | WAC-AS1 | 0.19 | 0.07 | lasso | 7 | 0.05 | 1.2e-05 | 4.5 | -5.2 | 2.1e-07 | 0.25 | 0.73 | 0.14 | FALSE |
34 | ROSMAP | Brain Pre-frontal Cortex | BAMBI | 0.07 | 0.05 | lasso | 3 | 0.04 | 2.8e-06 | -9.9 | -9.5 | 2.3e-21 | 0.51 | 0.94 | 0.03 | FALSE |
35 | ROSMAP | Brain Pre-frontal Cortex | WAC | 0.21 | 0.29 | lasso | 5 | 0.29 | 5.9e-37 | -13.9 | -13.9 | 5.5e-44 | 0.87 | 1.00 | 0.00 | FALSE |
36 | ROSMAP | Brain Pre-frontal Cortex | WAC-AS1 | 0.39 | 0.35 | bslmm | 570 | 0.49 | 1.8e-72 | -8.1 | -11.1 | 9.7e-29 | 0.67 | 1.00 | 0.00 | FALSE |
37 | YFS | Blood | WAC | 0.06 | 0.08 | bslmm | 649 | 0.08 | 2.2e-24 | -13.2 | 14.2 | 7.3e-46 | -0.86 | 0.98 | 0.02 | FALSE |
38 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | WAC | 0.11 | 0.04 | blup | 83 | 0.07 | 1.3e-03 | -14.0 | -12.2 | 2.7e-34 | 0.78 | 0.08 | 0.34 | FALSE |
39 | The Cancer Genome Atlas | Prostate Adenocarcinoma | WAC | 0.07 | 0.02 | blup | 83 | 0.06 | 8.7e-07 | -6.6 | -9.4 | 7.2e-21 | 0.66 | 0.56 | 0.24 | FALSE |
40 | The Cancer Genome Atlas | Thyroid Carcinoma | WAC | 0.06 | 0.04 | lasso | 3 | 0.03 | 4.2e-04 | -13.9 | -13.3 | 1.5e-40 | 0.88 | 0.10 | 0.58 | FALSE |