TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Lung FEV1/FVC ratio
:
→
chr1:1,781,220-4,040,155
Best TWAS P=1.1e-11 · Best GWAS P=7.84e-34 conditioned to 1.92e-24
2M
2.5M
3M
3.5M
4M
0
10
20
30
physical position
-log10 P
Conditional
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
3
GTEx
Skin Sun Exposed Lower leg
ARHGEF16
0.22
0.08
lasso
8
0.09
6.7e-08
5.1
6.8
1.1e-11
0.31
0.99
0.01
TRUE
4
GTEx
Spleen
RP3-395M20.9
0.42
0.14
lasso
3
0.15
1.1e-04
-5.3
-5.5
3.3e-08
-0.06
0.03
0.77
TRUE
5
ROSMAP
Brain Pre-frontal Cortex
ARHGEF16
0.19
0.14
lasso
8
0.17
2.0e-21
4.0
6.1
1.1e-09
0.28
1.00
0.00
FALSE
1
GTEx
Esophagus Mucosa
ARHGEF16
0.28
0.17
lasso
3
0.20
3.0e-13
5.3
5.5
4.6e-08
0.25
1.00
0.00
FALSE
2
GTEx
Esophagus Muscularis
RP3-395M20.12
0.08
0.06
enet
6
0.06
2.3e-04
3.1
-5.4
6.9e-08
0.00
0.08
0.82
FALSE