Best TWAS P=1.88e-15 · Best GWAS P=5.8e-13 conditioned to NaN
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Subcutaneous | APIP | 0.46 | 0.30 | enet | 67 | 0.47 | 6.6e-43 | -3.7 | -6.4 | 1.2e-10 | 0.11 | 1.00 | 0.00 | TRUE |
2 | GTEx | Adipose Visceral Omentum | APIP | 0.43 | 0.15 | enet | 50 | 0.31 | 1.1e-16 | -3.7 | -5.8 | 6.3e-09 | 0.09 | 1.00 | 0.00 | TRUE |
3 | GTEx | Artery Aorta | APIP | 0.47 | 0.32 | enet | 31 | 0.45 | 1.6e-27 | -3.9 | -5.8 | 7.9e-09 | 0.08 | 1.00 | 0.00 | TRUE |
4 | GTEx | Artery Coronary | APIP | 0.51 | 0.34 | enet | 19 | 0.46 | 1.8e-17 | -3.7 | -5.9 | 2.9e-09 | 0.14 | 1.00 | 0.00 | FALSE |
5 | GTEx | Artery Tibial | PDHX | 0.13 | 0.08 | lasso | 11 | 0.09 | 1.9e-07 | 5.6 | 5.4 | 6.1e-08 | 0.01 | 0.99 | 0.01 | FALSE |
6 | GTEx | Artery Tibial | APIP | 0.46 | 0.29 | enet | 57 | 0.40 | 4.6e-33 | -3.7 | -5.5 | 5.0e-08 | 0.05 | 1.00 | 0.00 | TRUE |
7 | GTEx | Brain Hypothalamus | APIP | 0.55 | 0.47 | enet | 42 | 0.55 | 2.1e-15 | -3.7 | -5.4 | 6.2e-08 | 0.17 | 0.98 | 0.01 | TRUE |
8 | GTEx | Brain Putamen basal ganglia | APIP | 0.41 | 0.43 | enet | 19 | 0.43 | 1.4e-11 | -3.9 | -5.1 | 2.7e-07 | 0.06 | 0.94 | 0.05 | FALSE |
9 | GTEx | Breast Mammary Tissue | APIP | 0.49 | 0.32 | lasso | 8 | 0.47 | 3.7e-27 | -3.9 | -5.3 | 8.8e-08 | 0.03 | 1.00 | 0.00 | FALSE |
10 | GTEx | Breast Mammary Tissue (Male) | APIP | 0.49 | 0.12 | lasso | 8 | 0.21 | 1.4e-05 | -3.7 | -6.2 | 6.6e-10 | 0.09 | 0.37 | 0.34 | FALSE |
11 | GTEx | Breast Mammary Tissue (Female) | APIP | 0.36 | 0.20 | enet | 42 | 0.30 | 1.4e-09 | 5.6 | -5.6 | 2.2e-08 | 0.02 | 0.91 | 0.03 | TRUE |
12 | GTEx | Colon Transverse | APIP | 0.21 | 0.09 | lasso | 16 | 0.08 | 1.7e-04 | 6.8 | -7.6 | 3.2e-14 | 0.06 | 0.10 | 0.88 | TRUE |
13 | GTEx | Esophagus Mucosa | APIP | 0.50 | 0.36 | lasso | 18 | 0.45 | 4.9e-33 | 5.6 | -5.2 | 1.6e-07 | 0.02 | 0.99 | 0.01 | TRUE |
14 | GTEx | Esophagus Muscularis | PDHX | 0.33 | 0.17 | lasso | 18 | 0.23 | 4.1e-14 | 5.6 | 6.7 | 1.7e-11 | -0.03 | 0.20 | 0.80 | FALSE |
15 | GTEx | Esophagus Muscularis | APIP | 0.58 | 0.50 | enet | 54 | 0.56 | 1.9e-40 | -3.7 | -5.3 | 1.4e-07 | 0.12 | 1.00 | 0.00 | FALSE |
16 | GTEx | Heart Atrial Appendage | APIP | 0.49 | 0.30 | lasso | 12 | 0.35 | 2.2e-16 | -3.7 | -5.3 | 1.0e-07 | 0.07 | 1.00 | 0.00 | FALSE |
17 | GTEx | Heart Left Ventricle | APIP | 0.38 | 0.15 | enet | 32 | 0.31 | 9.5e-17 | 5.6 | -5.6 | 2.2e-08 | 0.10 | 0.99 | 0.01 | FALSE |
18 | GTEx | Liver | APIP | 0.27 | 0.19 | lasso | 4 | 0.15 | 4.5e-05 | 5.6 | -5.9 | 4.9e-09 | 0.01 | 0.45 | 0.09 | TRUE |
19 | GTEx | Muscle Skeletal | APIP | 0.27 | 0.16 | lasso | 10 | 0.20 | 6.0e-19 | 5.7 | -5.9 | 4.8e-09 | 0.01 | 0.99 | 0.01 | FALSE |
20 | GTEx | Pancreas | PDHX | 0.28 | 0.06 | lasso | 17 | 0.07 | 8.4e-04 | 5.7 | 7.9 | 1.9e-15 | -0.07 | 0.53 | 0.20 | TRUE |
21 | GTEx | Pancreas | APIP | 0.47 | 0.28 | enet | 37 | 0.45 | 3.9e-21 | -3.9 | -5.5 | 4.1e-08 | 0.05 | 1.00 | 0.00 | FALSE |
22 | GTEx | Skin Not Sun Exposed Suprapubic | APIP | 0.52 | 0.26 | lasso | 17 | 0.51 | 1.2e-31 | -3.7 | -5.7 | 1.4e-08 | 0.03 | 1.00 | 0.00 | FALSE |
23 | GTEx | Spleen | APIP | 0.75 | 0.26 | enet | 48 | 0.55 | 7.6e-17 | -3.9 | -5.6 | 2.4e-08 | 0.02 | 0.94 | 0.02 | FALSE |
24 | GTEx | Uterus | APIP | 0.56 | 0.24 | enet | 47 | 0.26 | 3.7e-06 | -3.9 | -5.7 | 1.2e-08 | 0.00 | 0.33 | 0.10 | FALSE |
25 | GTEx | Whole Blood | APIP | 0.18 | 0.11 | lasso | 17 | 0.10 | 1.2e-09 | 5.6 | -5.2 | 1.7e-07 | -0.02 | 0.99 | 0.01 | FALSE |
26 | METSIM | Adipose | APIP | 0.25 | 0.20 | lasso | 12 | 0.31 | 1.6e-46 | 5.7 | -5.6 | 2.3e-08 | 0.03 | 0.99 | 0.01 | FALSE |
27 | YFS | Blood | APIP | 0.29 | 0.30 | lasso | 9 | 0.38 | 2.8e-131 | 5.7 | -6.0 | 1.8e-09 | 0.02 | 0.99 | 0.01 | FALSE |
28 | YFS | Blood | PDHX | 0.06 | 0.04 | lasso | 8 | 0.06 | 9.1e-18 | 6.5 | -5.1 | 3.0e-07 | 0.07 | 0.33 | 0.67 | FALSE |
29 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | PDHX | 0.03 | 0.01 | blup | 112 | 0.02 | 8.3e-03 | -2.9 | 6.3 | 4.0e-10 | -0.05 | 0.04 | 0.75 | FALSE |
30 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | APIP | 0.12 | 0.11 | lasso | 2 | 0.10 | 1.3e-05 | 5.6 | -5.6 | 2.1e-08 | 0.00 | 0.76 | 0.05 | FALSE |
31 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | PDHX | 0.18 | 0.20 | lasso | 14 | 0.25 | 2.6e-14 | 6.8 | 6.4 | 1.8e-10 | -0.07 | 0.02 | 0.98 | FALSE |
32 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | APIP | 0.24 | 0.05 | blup | 106 | 0.14 | 2.9e-06 | -3.9 | -5.4 | 7.7e-08 | 0.02 | 0.40 | 0.21 | TRUE |