TWAS
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Models
Genes
Traits
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Traits
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Lung FEV1/FVC ratio
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chr19:7,211,841-8,619,461
Best TWAS P=8.05e-10 · Best GWAS P=1.1e-10 conditioned to 1
7.2M
7.4M
7.6M
7.8M
8M
8.2M
8.4M
8.6M
0
2
4
6
8
10
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
2
The Cancer Genome Atlas
Kidney Renal Clear Cell Carcinoma
ARHGEF18
0.05
0.04
lasso
5
0.04
4.1e-05
-5.8
-6.1
8.1e-10
0.95
0.01
0.99
TRUE
4
The Cancer Genome Atlas
Thyroid Carcinoma
ARHGEF18
0.03
0.01
blup
72
0.00
1.4e-01
4.6
-5.6
1.7e-08
0.78
0.02
0.42
FALSE
3
The Cancer Genome Atlas
Brain Lower Grade Glioma
ARHGEF18
0.06
0.00
lasso
4
0.01
1.7e-02
-6.4
-5.5
3.4e-08
0.88
0.01
0.81
FALSE
1
GTEx
Adipose Subcutaneous
EVI5L
0.12
0.00
lasso
4
0.00
2.8e-01
-5.8
-5.3
1.2e-07
0.89
0.02
0.73
FALSE