Best TWAS P=7.17e-16 · Best GWAS P=3.13e-11 conditioned to 0.118
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | WFDC2 | 0.08 | 0.00 | bslmm | 497 | 0.02 | 1.9e-03 | 4.0 | -6.0 | 1.8e-09 | 0.09 | 0.09 | 0.03 | FALSE |
2 | GTEx | Artery Tibial | DBNDD2 | 0.19 | 0.16 | lasso | 3 | 0.14 | 2.8e-11 | -6.4 | -6.4 | 1.5e-10 | 0.99 | 0.01 | 0.99 | FALSE |
3 | GTEx | Colon Transverse | DBNDD2 | 0.29 | 0.20 | lasso | 3 | 0.20 | 9.8e-10 | -6.4 | -7.0 | 2.8e-12 | 0.97 | 0.00 | 1.00 | FALSE |
4 | GTEx | Esophagus Mucosa | DBNDD2 | 0.41 | 0.37 | lasso | 7 | 0.36 | 1.6e-25 | -6.4 | -6.5 | 9.3e-11 | 1.00 | 0.00 | 1.00 | FALSE |
5 | GTEx | Esophagus Muscularis | DBNDD2 | 0.17 | 0.14 | lasso | 4 | 0.11 | 2.3e-07 | -6.1 | -6.2 | 6.7e-10 | 0.94 | 0.01 | 0.99 | FALSE |
6 | GTEx | Skin Not Sun Exposed Suprapubic | DBNDD2 | 0.22 | 0.17 | enet | 25 | 0.17 | 1.4e-09 | -6.4 | -6.2 | 5.5e-10 | 0.86 | 0.01 | 0.99 | FALSE |
7 | GTEx | Skin Sun Exposed Lower leg | DBNDD2 | 0.38 | 0.26 | enet | 9 | 0.26 | 3.5e-21 | -6.6 | -6.7 | 2.1e-11 | 0.99 | 0.00 | 1.00 | FALSE |
8 | NTR | Blood | SYS1 | 0.06 | 0.03 | bslmm | 488 | 0.03 | 6.5e-11 | -6.4 | -6.3 | 2.2e-10 | 0.97 | 0.01 | 0.99 | FALSE |
9 | The Cancer Genome Atlas | Breast Invasive Carcinoma | SYS1-DBNDD2 | 0.02 | 0.00 | blup | 81 | 0.01 | 4.8e-04 | -6.0 | -8.1 | 7.2e-16 | 0.68 | 0.02 | 0.79 | TRUE |
10 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | SYS1-DBNDD2 | 0.06 | 0.02 | blup | 81 | 0.03 | 9.2e-05 | 4.6 | -6.0 | 2.4e-09 | 0.34 | 0.69 | 0.04 | FALSE |
11 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | SYS1-DBNDD2 | 0.03 | 0.02 | enet | 6 | 0.02 | 2.4e-03 | 4.6 | -6.0 | 1.8e-09 | 0.58 | 0.15 | 0.48 | FALSE |
12 | The Cancer Genome Atlas | Thyroid Carcinoma | SYS1-DBNDD2 | 0.06 | 0.04 | blup | 81 | 0.03 | 1.4e-03 | -6.1 | -6.9 | 6.6e-12 | 0.84 | 0.01 | 0.93 | FALSE |