TWAS
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Traits
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Traits
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Lung FEV1/FVC ratio
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chr2:35,883,253-37,472,804
Best TWAS P=9.13e-23 · Best GWAS P=5.63e-28 conditioned to 9.09e-07
35.8M
36M
36.2M
36.4M
36.6M
36.8M
37M
37.2M
37.4M
0
5
10
15
20
25
physical position
-log10 P
Conditional
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
4
The Cancer Genome Atlas
Prostate Adenocarcinoma
CRIM1
0.05
0.04
lasso
2
0.03
3.2e-04
9.7
9.8
9.1e-23
0.92
0.01
0.95
TRUE
3
GTEx
Lung
CRIM1
0.19
0.01
enet
38
0.05
1.8e-04
-1.3
-7.0
2.3e-12
-0.52
0.04
0.80
FALSE
1
GTEx
Heart Left Ventricle
CRIM1
0.20
0.11
lasso
6
0.15
3.1e-08
6.3
-6.1
1.2e-09
-0.38
0.82
0.07
FALSE
2
GTEx
Heart Left Ventricle
RP11-490M8.1
0.28
0.11
lasso
6
0.14
3.7e-08
6.3
-5.1
2.8e-07
-0.46
0.99
0.00
FALSE