Best TWAS P=1.08e-09 · Best GWAS P=7.7e-10 conditioned to 0.21
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | RIF1 | 0.11 | 0.07 | lasso | 4 | 0.07 | 8.0e-09 | 5.42 | -5.3 | 1.2e-07 | -0.77 | 0.12 | 0.88 | FALSE |
2 | GTEx | Adrenal Gland | RIF1 | 0.14 | 0.04 | lasso | 2 | 0.05 | 6.4e-03 | 5.42 | -5.9 | 4.7e-09 | -0.75 | 0.07 | 0.62 | FALSE |
3 | GTEx | Artery Aorta | RIF1 | 0.22 | 0.14 | lasso | 3 | 0.17 | 1.5e-09 | 5.42 | -5.5 | 4.8e-08 | -0.74 | 0.18 | 0.82 | FALSE |
4 | GTEx | Artery Coronary | RIF1 | 0.28 | 0.09 | lasso | 6 | 0.09 | 6.8e-04 | 5.42 | -5.3 | 1.1e-07 | -0.74 | 0.04 | 0.93 | FALSE |
5 | GTEx | Artery Tibial | RIF1 | 0.20 | 0.17 | lasso | 3 | 0.23 | 2.8e-18 | -3.72 | -5.2 | 2.0e-07 | -0.67 | 0.58 | 0.42 | FALSE |
6 | GTEx | Brain Putamen basal ganglia | RIF1 | 0.21 | 0.02 | enet | 10 | 0.03 | 7.4e-02 | 0.53 | -5.1 | 2.8e-07 | -0.56 | 0.05 | 0.50 | FALSE |
7 | GTEx | Breast Mammary Tissue (Male) | RIF1 | 0.42 | 0.18 | lasso | 9 | 0.26 | 7.5e-07 | -3.74 | -5.5 | 3.4e-08 | -0.61 | 0.09 | 0.78 | FALSE |
8 | GTEx | Cells Transformed fibroblasts | RIF1 | 0.11 | 0.07 | enet | 12 | 0.08 | 1.2e-06 | 5.42 | -5.3 | 1.2e-07 | -0.83 | 0.02 | 0.98 | FALSE |
9 | GTEx | Colon Sigmoid | RIF1 | 0.25 | 0.14 | lasso | 8 | 0.10 | 1.9e-04 | 5.42 | -5.7 | 1.4e-08 | -0.79 | 0.06 | 0.87 | FALSE |
10 | GTEx | Colon Transverse | RIF1 | 0.20 | 0.04 | lasso | 7 | 0.06 | 7.5e-04 | 6.15 | -6.0 | 1.7e-09 | -0.85 | 0.01 | 0.98 | FALSE |
11 | GTEx | Esophagus Gastroesophageal Junction | RIF1 | 0.15 | 0.13 | lasso | 5 | 0.16 | 1.8e-06 | 5.42 | -5.2 | 1.5e-07 | -0.69 | 0.20 | 0.58 | FALSE |
12 | GTEx | Lung | RIF1 | 0.15 | 0.12 | lasso | 2 | 0.17 | 4.0e-13 | 5.42 | -5.3 | 1.2e-07 | -0.70 | 0.21 | 0.79 | FALSE |
13 | GTEx | Pancreas | RIF1 | 0.16 | 0.11 | lasso | 3 | 0.08 | 2.7e-04 | 5.42 | -5.4 | 7.6e-08 | -0.80 | 0.03 | 0.93 | FALSE |
14 | GTEx | Prostate | RIF1 | 0.33 | 0.14 | enet | 20 | 0.24 | 1.2e-06 | -4.43 | -5.5 | 4.2e-08 | -0.60 | 0.17 | 0.67 | FALSE |
15 | GTEx | Spleen | RIF1 | 0.39 | 0.25 | lasso | 3 | 0.20 | 9.1e-06 | 5.42 | -5.2 | 2.0e-07 | -0.76 | 0.08 | 0.74 | FALSE |
16 | METSIM | Adipose | RIF1 | 0.04 | 0.04 | lasso | 7 | 0.03 | 2.2e-05 | 5.42 | -6.1 | 1.1e-09 | -0.94 | 0.01 | 0.99 | TRUE |