Best TWAS P=1.73e-09 · Best GWAS P=2.09e-08 conditioned to 0.215
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Artery Tibial | TMEM185B | 0.07 | 0.06 | lasso | 5 | 0.04 | 3.4e-04 | 4.7 | 5.2 | 2.3e-07 | 0.72 | 0.13 | 0.80 | FALSE |
2 | GTEx | Brain Cerebellar Hemisphere | EPB41L5 | 0.33 | 0.22 | lasso | 16 | 0.20 | 1.0e-05 | 5.6 | -5.6 | 1.8e-08 | -0.98 | 0.04 | 0.93 | FALSE |
3 | GTEx | Brain Cerebellum | PTPN4 | 0.15 | 0.09 | lasso | 4 | 0.04 | 1.9e-02 | 5.0 | -5.6 | 1.7e-08 | -0.86 | 0.08 | 0.78 | FALSE |
4 | GTEx | Brain Cerebellum | AC012363.4 | 0.34 | 0.06 | lasso | 5 | 0.08 | 1.9e-03 | 5.0 | -5.6 | 1.7e-08 | -0.89 | 0.05 | 0.80 | FALSE |
5 | GTEx | Cells Transformed fibroblasts | PTPN4 | 0.06 | 0.02 | lasso | 2 | 0.03 | 1.5e-03 | 5.6 | 5.9 | 4.1e-09 | 0.99 | 0.04 | 0.95 | FALSE |
6 | GTEx | Skin Sun Exposed Lower leg | TMEM37 | 0.08 | 0.03 | lasso | 5 | 0.01 | 1.0e-01 | 4.9 | 6.0 | 1.7e-09 | 0.32 | 0.12 | 0.46 | TRUE |
7 | GTEx | Testis | TMEM185B | 0.12 | 0.09 | enet | 10 | 0.12 | 5.7e-06 | 4.7 | 5.4 | 6.2e-08 | 0.77 | 0.15 | 0.83 | TRUE |
8 | METSIM | Adipose | TMEM37 | 0.05 | 0.01 | bslmm | 411 | 0.02 | 1.3e-03 | 4.5 | 5.9 | 3.1e-09 | 0.23 | 0.24 | 0.11 | FALSE |
9 | YFS | Blood | PTPN4 | 0.02 | 0.01 | lasso | 2 | 0.02 | 1.8e-06 | 5.5 | -5.3 | 9.3e-08 | -0.84 | 0.04 | 0.95 | FALSE |
10 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | TMEM185B | 0.03 | 0.03 | lasso | 3 | 0.02 | 5.2e-03 | 5.2 | 5.3 | 9.5e-08 | 0.79 | 0.00 | 0.90 | FALSE |
11 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | TMEM37 | 0.06 | 0.00 | blup | 58 | 0.02 | 2.4e-02 | -3.9 | 5.7 | 1.6e-08 | 0.00 | 0.02 | 0.32 | FALSE |
12 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | TMEM185B | 0.07 | 0.03 | blup | 21 | 0.03 | 1.3e-02 | 5.2 | 5.2 | 1.7e-07 | 0.73 | 0.01 | 0.74 | FALSE |