Best TWAS P=3.1e-08 · Best GWAS P=4.66e-08 conditioned to 0.122
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Subcutaneous | KIAA1143 | 0.21 | 0.20 | lasso | 6 | 0.20 | 5.6e-16 | -5.1 | -5.4 | 5.7e-08 | 0.98 | 0.01 | 0.99 | FALSE |
2 | GTEx | Adipose Visceral Omentum | KIAA1143 | 0.23 | 0.15 | enet | 25 | 0.14 | 7.7e-08 | -5.1 | -5.3 | 1.2e-07 | 0.92 | 0.02 | 0.98 | FALSE |
3 | GTEx | Breast Mammary Tissue | KIAA1143 | 0.08 | 0.12 | enet | 5 | 0.09 | 1.7e-05 | -4.9 | -5.3 | 1.4e-07 | 0.97 | 0.02 | 0.97 | FALSE |
4 | GTEx | Breast Mammary Tissue (Female) | KIAA1143 | 0.11 | 0.00 | lasso | 8 | 0.06 | 9.2e-03 | -4.1 | -5.5 | 3.1e-08 | 0.83 | 0.04 | 0.61 | TRUE |
5 | GTEx | Ovary | KIAA1143 | 0.24 | 0.26 | lasso | 5 | 0.19 | 1.7e-05 | -5.1 | -5.1 | 2.9e-07 | 0.97 | 0.02 | 0.97 | FALSE |
6 | GTEx | Skin Not Sun Exposed Suprapubic | KIAA1143 | 0.15 | 0.16 | lasso | 5 | 0.13 | 1.0e-07 | -5.3 | -5.2 | 2.6e-07 | 0.98 | 0.02 | 0.98 | FALSE |
7 | GTEx | Skin Sun Exposed Lower leg | KIAA1143 | 0.16 | 0.16 | lasso | 7 | 0.16 | 2.0e-13 | -5.1 | -5.1 | 2.7e-07 | 0.97 | 0.02 | 0.98 | FALSE |
8 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | KIAA1143 | 0.03 | 0.01 | blup | 28 | 0.01 | 1.9e-02 | -5.1 | -5.3 | 1.4e-07 | 0.94 | 0.01 | 0.72 | FALSE |
9 | The Cancer Genome Atlas | Breast Invasive Carcinoma | KIAA1143 | 0.01 | 0.01 | enet | 8 | 0.01 | 1.3e-03 | -5.3 | -5.5 | 4.0e-08 | 0.98 | 0.01 | 0.94 | FALSE |
10 | The Cancer Genome Atlas | Colon Adenocarcinoma | KIAA1143 | 0.10 | 0.10 | lasso | 2 | 0.10 | 1.8e-06 | -5.3 | -5.2 | 2.3e-07 | 0.96 | 0.01 | 0.98 | FALSE |
11 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | KIAA1143 | 0.03 | 0.00 | blup | 34 | 0.00 | 1.1e-01 | -5.1 | -5.5 | 4.3e-08 | 0.96 | 0.01 | 0.60 | FALSE |
12 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | KIAA1143 | 0.14 | 0.10 | enet | 15 | 0.09 | 1.3e-04 | -5.3 | -5.2 | 2.5e-07 | 0.97 | 0.01 | 0.98 | FALSE |
13 | The Cancer Genome Atlas | Prostate Adenocarcinoma | KIAA1143 | 0.05 | 0.07 | lasso | 6 | 0.06 | 9.1e-07 | -5.1 | -5.2 | 1.7e-07 | 0.96 | 0.01 | 0.99 | FALSE |