Best TWAS P=1.85e-12 · Best GWAS P=5.66e-11 conditioned to 1
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | ULK4 | 0.49 | 0.63 | enet | 43 | 0.66 | 4.3e-109 | 6.5 | 6.2 | 7.0e-10 | 0.98 | 0.03 | 0.97 | FALSE |
2 | GTEx | Adipose Subcutaneous | ULK4 | 0.16 | 0.09 | lasso | 7 | 0.07 | 1.9e-06 | 6.3 | 6.6 | 5.3e-11 | 0.97 | 0.07 | 0.93 | FALSE |
3 | GTEx | Adipose Visceral Omentum | ULK4 | 0.15 | 0.15 | lasso | 4 | 0.14 | 6.2e-08 | 6.4 | 6.5 | 6.2e-11 | 0.95 | 0.07 | 0.93 | FALSE |
4 | GTEx | Artery Aorta | ULK4 | 0.45 | 0.45 | enet | 35 | 0.48 | 9.1e-30 | 6.3 | 6.5 | 8.1e-11 | 0.97 | 0.08 | 0.92 | FALSE |
5 | GTEx | Artery Coronary | ULK4 | 0.23 | 0.18 | lasso | 12 | 0.15 | 8.0e-06 | 6.3 | 6.6 | 5.5e-11 | 0.89 | 0.06 | 0.91 | FALSE |
6 | GTEx | Artery Tibial | ULK4 | 0.26 | 0.20 | enet | 34 | 0.23 | 5.5e-18 | 6.3 | 6.7 | 2.1e-11 | 0.96 | 0.07 | 0.93 | FALSE |
7 | GTEx | Brain Caudate basal ganglia | ULK4 | 0.26 | 0.09 | lasso | 4 | 0.01 | 1.6e-01 | 6.3 | 6.4 | 1.6e-10 | 0.88 | 0.07 | 0.62 | FALSE |
8 | GTEx | Brain Cerebellum | ULK4 | 0.23 | 0.13 | lasso | 9 | 0.08 | 2.3e-03 | 6.3 | 6.4 | 1.4e-10 | 0.94 | 0.06 | 0.89 | FALSE |
9 | GTEx | Brain Cortex | ULK4 | 0.53 | 0.41 | lasso | 14 | 0.42 | 7.7e-13 | 6.4 | 6.7 | 2.4e-11 | 0.95 | 0.06 | 0.93 | FALSE |
10 | GTEx | Brain Frontal Cortex BA9 | ULK4 | 0.51 | 0.30 | enet | 34 | 0.37 | 1.1e-10 | 6.4 | 6.2 | 5.1e-10 | 0.88 | 0.08 | 0.92 | FALSE |
11 | GTEx | Brain Putamen basal ganglia | ULK4 | 0.53 | 0.39 | lasso | 10 | 0.34 | 7.3e-09 | 6.5 | 6.6 | 4.8e-11 | 0.98 | 0.06 | 0.93 | FALSE |
12 | GTEx | Cells EBV-transformed lymphocytes | ULK4 | 0.54 | 0.34 | enet | 49 | 0.39 | 7.3e-14 | 6.5 | 6.6 | 4.2e-11 | 0.96 | 0.03 | 0.97 | FALSE |
13 | GTEx | Cells Transformed fibroblasts | ULK4 | 0.54 | 0.38 | enet | 79 | 0.58 | 3.7e-53 | 6.5 | 6.3 | 2.2e-10 | 0.94 | 0.04 | 0.96 | FALSE |
14 | GTEx | Colon Transverse | ULK4 | 0.24 | 0.05 | lasso | 8 | 0.03 | 9.1e-03 | 6.5 | 6.5 | 7.3e-11 | 0.98 | 0.04 | 0.93 | FALSE |
15 | GTEx | Esophagus Gastroesophageal Junction | ULK4 | 0.22 | 0.10 | lasso | 5 | 0.09 | 3.0e-04 | 6.5 | 6.2 | 6.2e-10 | 0.98 | 0.04 | 0.93 | FALSE |
16 | GTEx | Esophagus Mucosa | ULK4 | 0.34 | 0.24 | lasso | 9 | 0.26 | 3.0e-17 | 6.5 | 6.5 | 7.5e-11 | 0.98 | 0.03 | 0.97 | FALSE |
17 | GTEx | Esophagus Muscularis | ULK4 | 0.20 | 0.18 | enet | 16 | 0.18 | 4.1e-11 | 6.5 | 6.5 | 7.7e-11 | 0.99 | 0.04 | 0.96 | FALSE |
18 | GTEx | Lung | TRAK1 | 0.07 | 0.01 | enet | 4 | 0.00 | 2.1e-01 | 6.5 | 6.5 | 7.6e-11 | 0.93 | 0.06 | 0.68 | FALSE |
19 | GTEx | Muscle Skeletal | ULK4 | 0.17 | 0.16 | lasso | 8 | 0.20 | 6.1e-19 | 6.2 | 6.5 | 6.8e-11 | 0.97 | 0.07 | 0.93 | FALSE |
20 | GTEx | Nerve Tibial | ULK4 | 0.31 | 0.27 | lasso | 10 | 0.31 | 1.9e-22 | 6.5 | 6.6 | 4.9e-11 | 0.98 | 0.04 | 0.96 | FALSE |
21 | GTEx | Pancreas | ULK4 | 0.47 | 0.10 | lasso | 8 | 0.17 | 1.4e-07 | 6.3 | 6.1 | 8.8e-10 | 0.95 | 0.04 | 0.96 | FALSE |
22 | GTEx | Skin Not Sun Exposed Suprapubic | ULK4 | 0.12 | 0.00 | lasso | 5 | 0.00 | 2.3e-01 | 6.3 | 5.4 | 8.4e-08 | 0.80 | 0.06 | 0.68 | FALSE |
23 | GTEx | Skin Sun Exposed Lower leg | ULK4 | 0.20 | 0.16 | enet | 29 | 0.15 | 1.2e-12 | 6.5 | 5.8 | 5.6e-09 | 0.92 | 0.05 | 0.95 | FALSE |
24 | GTEx | Spleen | ULK4 | 0.78 | 0.51 | enet | 39 | 0.50 | 5.4e-15 | 6.3 | 6.3 | 4.0e-10 | 0.92 | 0.09 | 0.91 | FALSE |
25 | GTEx | Stomach | ULK4 | 0.33 | 0.22 | enet | 21 | 0.27 | 3.0e-13 | 6.5 | 6.2 | 7.4e-10 | 0.95 | 0.05 | 0.95 | FALSE |
26 | GTEx | Thyroid | ULK4 | 0.38 | 0.25 | lasso | 7 | 0.30 | 2.4e-23 | 6.3 | 6.5 | 7.8e-11 | 0.97 | 0.09 | 0.91 | FALSE |
27 | GTEx | Whole Blood | ULK4 | 0.23 | 0.12 | enet | 35 | 0.18 | 5.1e-16 | 6.5 | 6.7 | 2.1e-11 | 0.91 | 0.04 | 0.96 | FALSE |
28 | METSIM | Adipose | ULK4 | 0.07 | 0.10 | enet | 32 | 0.10 | 1.1e-14 | 6.3 | 6.5 | 8.6e-11 | 0.96 | 0.05 | 0.95 | FALSE |
29 | ROSMAP | Brain Pre-frontal Cortex | ULK4 | 0.14 | 0.19 | enet | 17 | 0.20 | 5.4e-25 | 6.2 | 6.6 | 4.5e-11 | 0.93 | 0.08 | 0.92 | FALSE |
30 | YFS | Blood | ULK4 | 0.04 | 0.07 | lasso | 5 | 0.07 | 5.7e-21 | 6.5 | 6.4 | 1.2e-10 | 1.00 | 0.03 | 0.97 | FALSE |
31 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | ULK4 | 0.16 | 0.18 | lasso | 12 | 0.20 | 7.9e-17 | 6.5 | 6.6 | 4.9e-11 | 0.98 | 0.03 | 0.97 | FALSE |
32 | The Cancer Genome Atlas | Breast Invasive Carcinoma | ULK4 | 0.20 | 0.30 | lasso | 9 | 0.32 | 1.1e-66 | 6.5 | 6.6 | 5.2e-11 | 0.99 | 0.03 | 0.97 | FALSE |
33 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | ULK4 | 0.16 | 0.16 | enet | 14 | 0.15 | 8.0e-08 | 6.4 | 5.4 | 5.5e-08 | 0.81 | 0.04 | 0.96 | FALSE |
34 | The Cancer Genome Atlas | Colon Adenocarcinoma | ULK4 | 0.34 | 0.35 | lasso | 13 | 0.37 | 3.6e-22 | 6.5 | 6.4 | 1.2e-10 | 1.00 | 0.03 | 0.97 | FALSE |
35 | The Cancer Genome Atlas | Esophageal Carcinoma | ULK4 | 0.30 | 0.18 | blup | 256 | 0.21 | 3.3e-07 | 6.5 | 6.4 | 1.9e-10 | 0.93 | 0.04 | 0.96 | FALSE |
36 | The Cancer Genome Atlas | Glioblastoma Multiforme | ULK4 | 0.37 | 0.31 | lasso | 9 | 0.31 | 3.1e-10 | 6.4 | 6.4 | 1.7e-10 | 0.98 | 0.04 | 0.96 | FALSE |
37 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | ULK4 | 0.15 | 0.22 | enet | 35 | 0.24 | 5.6e-27 | 6.5 | 6.7 | 2.2e-11 | 0.99 | 0.03 | 0.97 | FALSE |
38 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | ULK4 | 0.14 | 0.16 | lasso | 4 | 0.20 | 9.6e-22 | 6.5 | 6.5 | 7.9e-11 | 0.98 | 0.04 | 0.96 | FALSE |
39 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | ULK4 | 0.32 | 0.36 | lasso | 17 | 0.36 | 3.5e-21 | 6.5 | 6.7 | 2.4e-11 | 0.98 | 0.03 | 0.97 | FALSE |
40 | The Cancer Genome Atlas | Brain Lower Grade Glioma | ULK4 | 0.22 | 0.36 | lasso | 10 | 0.35 | 1.5e-41 | 6.3 | 6.3 | 2.8e-10 | 0.99 | 0.03 | 0.97 | FALSE |
41 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | ULK4 | 0.12 | 0.03 | blup | 256 | 0.05 | 1.9e-03 | 6.3 | 6.7 | 2.7e-11 | 0.81 | 0.05 | 0.82 | FALSE |
42 | The Cancer Genome Atlas | Lung Adenocarcinoma | ULK4 | 0.21 | 0.25 | lasso | 10 | 0.26 | 1.5e-29 | 6.5 | 6.4 | 1.3e-10 | 1.00 | 0.03 | 0.97 | FALSE |
43 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | ULK4 | 0.14 | 0.17 | enet | 15 | 0.18 | 1.7e-19 | 6.5 | 6.4 | 1.2e-10 | 0.97 | 0.03 | 0.97 | FALSE |
44 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | ULK4 | 0.16 | 0.14 | lasso | 4 | 0.14 | 7.8e-10 | 6.5 | 6.5 | 5.8e-11 | 0.99 | 0.03 | 0.97 | FALSE |
45 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | ULK4 | 0.29 | 0.35 | lasso | 6 | 0.32 | 7.4e-14 | 6.3 | 6.5 | 5.9e-11 | 0.97 | 0.04 | 0.96 | FALSE |
46 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | ULK4 | 0.28 | 0.31 | lasso | 13 | 0.33 | 5.8e-14 | 6.5 | 6.8 | 8.2e-12 | 0.97 | 0.04 | 0.96 | FALSE |
47 | The Cancer Genome Atlas | Prostate Adenocarcinoma | ULK4 | 0.18 | 0.26 | enet | 22 | 0.27 | 2.5e-28 | 6.5 | 7.0 | 1.8e-12 | 0.98 | 0.03 | 0.97 | TRUE |
48 | The Cancer Genome Atlas | Rectum Adenocarcinoma | ULK4 | 0.29 | 0.23 | blup | 258 | 0.22 | 6.7e-06 | 6.4 | 6.8 | 1.2e-11 | 0.92 | 0.04 | 0.94 | FALSE |
49 | The Cancer Genome Atlas | Soft Tissue Sarcoma | ULK4 | 0.15 | 0.12 | lasso | 7 | 0.13 | 6.5e-08 | 6.5 | 6.5 | 9.0e-11 | 0.99 | 0.04 | 0.96 | FALSE |
50 | The Cancer Genome Atlas | Skin Cutaneous Melanoma | ULK4 | 0.32 | 0.16 | lasso | 13 | 0.22 | 1.9e-06 | 6.4 | 6.5 | 1.1e-10 | 0.98 | 0.04 | 0.96 | FALSE |
51 | The Cancer Genome Atlas | Stomach Adenocarcinoma | ULK4 | 0.18 | 0.23 | enet | 13 | 0.24 | 5.3e-17 | 6.5 | 6.3 | 3.0e-10 | 0.98 | 0.03 | 0.97 | FALSE |
52 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | ULK4 | 0.14 | 0.06 | enet | 24 | 0.10 | 1.6e-04 | 6.5 | 5.3 | 1.3e-07 | 0.89 | 0.04 | 0.92 | FALSE |
53 | The Cancer Genome Atlas | Thyroid Carcinoma | ULK4 | 0.30 | 0.46 | enet | 23 | 0.47 | 2.9e-51 | 6.5 | 6.8 | 1.2e-11 | 0.99 | 0.03 | 0.97 | FALSE |
54 | The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | ULK4 | 0.23 | 0.15 | enet | 14 | 0.18 | 9.9e-06 | 6.4 | 6.4 | 1.4e-10 | 0.89 | 0.04 | 0.95 | FALSE |