Best TWAS P=4.24e-11 · Best GWAS P=4.25e-11 conditioned to 1
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | PDLIM2 | 0.08 | 0.06 | enet | 11 | 0.06 | 8.9e-08 | -5.7 | 5.5 | 4.1e-08 | -0.88 | 0.10 | 0.90 | FALSE |
2 | GTEx | Adipose Subcutaneous | BIN3 | 0.11 | 0.10 | enet | 11 | 0.10 | 1.4e-08 | -5.7 | -5.7 | 1.4e-08 | 0.86 | 0.05 | 0.95 | FALSE |
3 | GTEx | Adipose Subcutaneous | CCAR2 | 0.15 | 0.14 | enet | 26 | 0.13 | 6.9e-11 | -5.9 | -5.8 | 8.8e-09 | 0.92 | 0.04 | 0.96 | FALSE |
4 | GTEx | Adipose Visceral Omentum | BIN3 | 0.09 | 0.10 | lasso | 2 | 0.06 | 5.5e-04 | -5.7 | -5.8 | 6.0e-09 | 0.89 | 0.03 | 0.95 | FALSE |
5 | GTEx | Adipose Visceral Omentum | CCAR2 | 0.22 | 0.03 | lasso | 3 | 0.01 | 1.0e-01 | -6.1 | -5.8 | 8.4e-09 | 0.89 | 0.05 | 0.70 | FALSE |
6 | GTEx | Artery Aorta | BIN3 | 0.11 | 0.07 | lasso | 3 | 0.06 | 2.1e-04 | -6.6 | -6.5 | 7.2e-11 | 0.99 | 0.01 | 0.99 | FALSE |
7 | GTEx | Artery Tibial | BIN3 | 0.13 | 0.09 | lasso | 2 | 0.08 | 1.0e-06 | -6.6 | -6.6 | 4.9e-11 | 1.00 | 0.00 | 1.00 | FALSE |
8 | GTEx | Breast Mammary Tissue (Male) | BIN3 | 0.22 | 0.00 | lasso | 4 | -0.01 | 6.5e-01 | -5.3 | -5.4 | 5.1e-08 | 0.80 | 0.05 | 0.48 | FALSE |
9 | GTEx | Breast Mammary Tissue (Female) | BIN3 | 0.03 | 0.00 | lasso | 2 | 0.02 | 7.6e-02 | -6.4 | -6.3 | 3.4e-10 | 0.92 | 0.02 | 0.58 | FALSE |
10 | GTEx | Cells EBV-transformed lymphocytes | CCAR2 | 0.20 | 0.05 | lasso | 3 | 0.03 | 3.1e-02 | -6.1 | -6.1 | 1.4e-09 | 0.93 | 0.05 | 0.83 | FALSE |
11 | GTEx | Cells Transformed fibroblasts | BIN3 | 0.26 | 0.12 | lasso | 7 | 0.16 | 2.4e-12 | -6.6 | -6.1 | 1.2e-09 | 0.90 | 0.00 | 1.00 | FALSE |
12 | GTEx | Cells Transformed fibroblasts | C8orf58 | 0.36 | 0.42 | lasso | 7 | 0.47 | 3.6e-39 | -5.7 | -5.9 | 2.8e-09 | 0.91 | 0.17 | 0.83 | FALSE |
13 | GTEx | Cells Transformed fibroblasts | RP11-582J16.5 | 0.11 | 0.10 | lasso | 4 | 0.09 | 2.0e-07 | -5.4 | 5.3 | 1.3e-07 | -0.84 | 0.34 | 0.66 | FALSE |
14 | GTEx | Colon Transverse | BIN3 | 0.17 | 0.12 | lasso | 1 | 0.09 | 4.8e-05 | -6.3 | -6.3 | 2.3e-10 | 0.96 | 0.01 | 0.98 | FALSE |
15 | GTEx | Esophagus Mucosa | BIN3 | 0.13 | 0.09 | lasso | 3 | 0.10 | 5.4e-07 | -6.3 | -6.6 | 5.7e-11 | 0.97 | 0.00 | 1.00 | FALSE |
16 | GTEx | Esophagus Muscularis | BIN3 | 0.10 | 0.01 | lasso | 3 | 0.01 | 9.3e-02 | 2.6 | -5.6 | 2.8e-08 | 0.75 | 0.01 | 0.94 | FALSE |
17 | GTEx | Lung | BIN3 | 0.21 | 0.12 | enet | 25 | 0.14 | 7.9e-11 | -5.9 | -6.5 | 7.1e-11 | 0.86 | 0.02 | 0.98 | FALSE |
18 | GTEx | Lung | CCAR2 | 0.11 | 0.07 | enet | 11 | 0.08 | 2.0e-06 | -6.4 | -6.4 | 1.9e-10 | 0.96 | 0.02 | 0.98 | FALSE |
19 | GTEx | Muscle Skeletal | CCAR2 | 0.06 | 0.02 | enet | 7 | 0.01 | 2.7e-02 | -5.9 | -6.2 | 5.7e-10 | 0.95 | 0.02 | 0.98 | FALSE |
20 | GTEx | Nerve Tibial | CCAR2 | 0.09 | 0.08 | lasso | 4 | 0.08 | 3.7e-06 | -6.1 | -5.8 | 6.9e-09 | 0.91 | 0.06 | 0.94 | FALSE |
21 | GTEx | Nerve Tibial | C8orf58 | 0.14 | 0.10 | lasso | 6 | 0.11 | 2.7e-08 | -5.9 | -6.2 | 4.5e-10 | 0.94 | 0.10 | 0.90 | FALSE |
22 | GTEx | Ovary | BIN3 | 0.38 | 0.24 | lasso | 5 | 0.30 | 4.0e-08 | -5.5 | -5.4 | 7.1e-08 | 0.83 | 0.03 | 0.96 | FALSE |
23 | GTEx | Skin Not Sun Exposed Suprapubic | BIN3 | 0.09 | 0.09 | lasso | 2 | 0.08 | 2.5e-05 | -6.2 | -6.3 | 3.0e-10 | 0.90 | 0.05 | 0.93 | FALSE |
24 | GTEx | Skin Not Sun Exposed Suprapubic | CCAR2 | 0.11 | 0.08 | lasso | 4 | 0.05 | 8.8e-04 | -5.5 | -6.0 | 2.0e-09 | 0.87 | 0.05 | 0.95 | FALSE |
25 | GTEx | Skin Sun Exposed Lower leg | BIN3 | 0.13 | 0.14 | lasso | 4 | 0.16 | 7.6e-13 | -6.6 | -6.4 | 1.6e-10 | 0.98 | 0.00 | 1.00 | FALSE |
26 | GTEx | Skin Sun Exposed Lower leg | CCAR2 | 0.11 | 0.09 | lasso | 5 | 0.10 | 1.7e-08 | -5.3 | -5.7 | 1.1e-08 | 0.88 | 0.10 | 0.90 | FALSE |
27 | GTEx | Stomach | BIN3 | 0.17 | 0.00 | enet | 9 | 0.02 | 3.4e-02 | -6.6 | -5.2 | 1.5e-07 | 0.88 | 0.01 | 0.96 | FALSE |
28 | GTEx | Stomach | PIWIL2 | 0.17 | 0.06 | lasso | 7 | 0.04 | 4.0e-03 | -4.5 | 6.0 | 1.6e-09 | -0.28 | 0.14 | 0.28 | FALSE |
29 | GTEx | Testis | POLR3D | 0.21 | 0.11 | enet | 11 | 0.13 | 1.6e-06 | -5.2 | -5.4 | 5.6e-08 | -0.01 | 0.80 | 0.17 | FALSE |
30 | GTEx | Thyroid | BIN3 | 0.17 | 0.12 | lasso | 4 | 0.12 | 2.1e-09 | -6.6 | -6.6 | 4.6e-11 | 0.98 | 0.00 | 1.00 | FALSE |
31 | GTEx | Thyroid | CCAR2 | 0.17 | 0.12 | lasso | 5 | 0.12 | 9.5e-10 | -5.6 | -6.0 | 1.5e-09 | 0.91 | 0.06 | 0.94 | FALSE |
32 | GTEx | Thyroid | C8orf58 | 0.07 | 0.03 | lasso | 2 | 0.03 | 3.0e-03 | -5.9 | -5.9 | 3.8e-09 | 0.88 | 0.03 | 0.96 | FALSE |
33 | GTEx | Whole Blood | C8orf58 | 0.05 | 0.03 | lasso | 4 | 0.02 | 5.5e-03 | -6.4 | -6.3 | 2.4e-10 | 0.96 | 0.02 | 0.94 | FALSE |
34 | METSIM | Adipose | BIN3 | 0.07 | 0.06 | enet | 12 | 0.06 | 5.6e-09 | -6.6 | -5.4 | 5.6e-08 | 0.91 | 0.00 | 1.00 | FALSE |
35 | METSIM | Adipose | C8orf58 | 0.04 | 0.02 | enet | 13 | 0.02 | 1.1e-03 | -5.9 | -6.4 | 2.0e-10 | 0.88 | 0.04 | 0.96 | FALSE |
36 | ROSMAP | Brain Pre-frontal Cortex | BIN3 | 0.27 | 0.38 | lasso | 2 | 0.38 | 7.2e-52 | -6.6 | -6.6 | 4.2e-11 | 1.00 | 0.00 | 1.00 | TRUE |
37 | ROSMAP | Brain Pre-frontal Cortex | CCAR2 | 0.11 | 0.08 | lasso | 6 | 0.07 | 1.8e-09 | -5.7 | 5.8 | 6.6e-09 | -0.91 | 0.15 | 0.85 | FALSE |
38 | ROSMAP | Brain Pre-frontal Cortex | C8orf58 | 0.15 | 0.18 | lasso | 5 | 0.18 | 7.6e-23 | -5.9 | -6.2 | 5.4e-10 | 0.92 | 0.11 | 0.89 | FALSE |
39 | ROSMAP | Brain Pre-frontal Cortex | CTD-3247F14.2 | 0.10 | 0.12 | lasso | 3 | 0.12 | 1.5e-14 | -5.2 | -5.7 | 1.2e-08 | 0.83 | 0.10 | 0.90 | FALSE |
40 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | C8orf58 | 0.04 | 0.05 | blup | 69 | 0.04 | 1.7e-04 | -5.9 | -6.0 | 1.6e-09 | 0.92 | 0.04 | 0.94 | FALSE |
41 | The Cancer Genome Atlas | Breast Invasive Carcinoma | C8orf58 | 0.04 | 0.04 | blup | 71 | 0.05 | 1.7e-10 | -5.8 | -5.9 | 3.8e-09 | 0.86 | 0.10 | 0.90 | FALSE |
42 | The Cancer Genome Atlas | Colon Adenocarcinoma | C8orf58 | 0.11 | 0.03 | blup | 69 | 0.04 | 2.5e-03 | -5.3 | -6.0 | 2.4e-09 | 0.86 | 0.06 | 0.88 | FALSE |
43 | The Cancer Genome Atlas | Colon Adenocarcinoma | FLJ14107 | 0.05 | 0.04 | blup | 66 | 0.04 | 1.8e-03 | -5.9 | -6.0 | 2.4e-09 | 0.91 | 0.04 | 0.65 | FALSE |
44 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | C8orf58 | 0.04 | 0.01 | blup | 69 | 0.02 | 2.9e-03 | -4.3 | -5.9 | 3.0e-09 | 0.88 | 0.06 | 0.84 | FALSE |
45 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | PIWIL2 | 0.05 | 0.05 | blup | 73 | 0.06 | 2.1e-07 | -5.3 | -5.8 | 8.6e-09 | 0.01 | 0.01 | 0.99 | FALSE |
46 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | C8orf58 | 0.04 | 0.03 | blup | 69 | 0.04 | 3.2e-05 | -5.8 | -5.8 | 6.5e-09 | 0.88 | 0.02 | 0.98 | FALSE |
47 | The Cancer Genome Atlas | Brain Lower Grade Glioma | C8orf58 | 0.11 | 0.18 | lasso | 4 | 0.17 | 4.9e-19 | -5.8 | -5.9 | 4.2e-09 | 0.90 | 0.09 | 0.91 | FALSE |
48 | The Cancer Genome Atlas | Lung Adenocarcinoma | BIN3 | 0.04 | 0.03 | lasso | 4 | 0.04 | 3.6e-05 | -5.9 | -6.1 | 1.4e-09 | 0.88 | 0.03 | 0.96 | FALSE |
49 | The Cancer Genome Atlas | Lung Adenocarcinoma | C8orf58 | 0.05 | 0.06 | lasso | 3 | 0.05 | 2.1e-06 | -5.9 | -6.0 | 2.0e-09 | 0.92 | 0.04 | 0.96 | FALSE |
50 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | C8orf58 | 0.02 | 0.01 | blup | 69 | 0.02 | 4.9e-03 | -5.6 | -6.3 | 2.8e-10 | 0.94 | 0.01 | 0.92 | FALSE |
51 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | POLR3D | 0.02 | 0.02 | blup | 39 | 0.01 | 1.1e-02 | -5.3 | -5.8 | 8.6e-09 | -0.03 | 0.00 | 0.82 | TRUE |
52 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | C8orf58 | 0.05 | 0.06 | lasso | 4 | 0.03 | 2.1e-03 | -5.6 | -6.0 | 2.2e-09 | 0.84 | 0.08 | 0.61 | FALSE |
53 | The Cancer Genome Atlas | Prostate Adenocarcinoma | BIN3 | 0.02 | 0.01 | blup | 97 | 0.01 | 3.4e-02 | -5.9 | -5.7 | 1.2e-08 | 0.88 | 0.09 | 0.72 | FALSE |
54 | The Cancer Genome Atlas | Prostate Adenocarcinoma | C8orf58 | 0.07 | 0.11 | lasso | 2 | 0.10 | 5.6e-11 | -5.6 | -5.8 | 7.9e-09 | 0.88 | 0.15 | 0.85 | FALSE |
55 | The Cancer Genome Atlas | Soft Tissue Sarcoma | BIN3 | 0.05 | 0.02 | blup | 96 | 0.02 | 2.0e-02 | -6.2 | -5.8 | 6.1e-09 | 0.89 | 0.02 | 0.79 | FALSE |
56 | The Cancer Genome Atlas | Thyroid Carcinoma | BIN3 | 0.07 | 0.04 | lasso | 5 | 0.05 | 2.5e-05 | -6.3 | -6.2 | 4.7e-10 | 0.95 | 0.02 | 0.98 | FALSE |
57 | The Cancer Genome Atlas | Thyroid Carcinoma | C8orf58 | 0.06 | 0.09 | blup | 69 | 0.09 | 4.8e-09 | -5.6 | -6.3 | 2.3e-10 | 0.89 | 0.13 | 0.87 | FALSE |